Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005254A_C01 KMC005254A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00433.1|AC060755_3 putative AT-Hook DNA-binding protein [O... 49 4e-05
ref|NP_199476.1| putative protein; protein id: At5g46640.1 [Arab... 49 7e-05
ref|NP_567546.1| putative protein; protein id: At4g17950.1, supp... 44 0.002
pir||T52291 probable DNA-binding protein AT-hook 2 [imported] - ... 44 0.002
emb|CAA10857.1| AT-hook protein 1 [Arabidopsis thaliana] 41 0.011
>gb|AAK00433.1|AC060755_3 putative AT-Hook DNA-binding protein [Oryza sativa]
Length = 405
Score = 49.3 bits (116), Expect = 4e-05
Identities = 33/77 (42%), Positives = 46/77 (58%), Gaps = 3/77 (3%)
Frame = -1
Query: 623 ASAVQVIVGSFIADGKKSNSSNLKSGPPSMPSSQTLTFGSPVTPASPPTSQGPSTESSDD 444
A+ VQV+V SFIA+GKKS + P Q T+ P ASPP S+G S+ SSDD
Sbjct: 293 ATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQMATY-VPAPVASPP-SEGTSSGSSDD 350
Query: 443 NGN--SRPGL-YNNASQ 402
+G+ + G+ YN++ Q
Sbjct: 351 SGSPINHSGMPYNHSGQ 367
>ref|NP_199476.1| putative protein; protein id: At5g46640.1 [Arabidopsis thaliana]
gi|9758500|dbj|BAB08908.1| contains similarity to
AT-hook DNA-binding protein~gene_id:MZA15.3 [Arabidopsis
thaliana]
Length = 386
Score = 48.5 bits (114), Expect = 7e-05
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = -1
Query: 623 ASAVQVIVGSFIADGKKSNSSNL-----KSGPPSMPSSQTLTFGSPVTPASPPTSQGPST 459
A+ VQVIVGSF+A+ KK S++ ++ P+ + L FGS SQGPS+
Sbjct: 285 ATQVQVIVGSFVAEAKKPKQSSVNIARGQNPEPASAPANMLNFGS--------VSQGPSS 336
Query: 458 ESSDDNGNSRPGLYNN 411
ESS++N + P ++ +
Sbjct: 337 ESSEENESGSPAMHRD 352
>ref|NP_567546.1| putative protein; protein id: At4g17950.1, supported by cDNA:
gi_15451059, supported by cDNA: gi_20148332 [Arabidopsis
thaliana] gi|15451060|gb|AAK96801.1| putative protein
[Arabidopsis thaliana] gi|20148333|gb|AAM10057.1|
putative protein [Arabidopsis thaliana]
Length = 439
Score = 43.5 bits (101), Expect = 0.002
Identities = 28/69 (40%), Positives = 41/69 (58%), Gaps = 4/69 (5%)
Frame = -1
Query: 620 SAVQVIVGSFIADGKKSNSS--NLKSGP-PSMPSSQTLTFGSPVTPASPPT-SQGPSTES 453
S VQVIVGSF+ DG+K S ++ P P+ + L+FG P SP + Q S+ES
Sbjct: 329 SQVQVIVGSFVPDGRKQKQSAGRAQNTPEPASAPANMLSFGGVGGPGSPRSQGQQHSSES 388
Query: 452 SDDNGNSRP 426
S++N ++ P
Sbjct: 389 SEENESNSP 397
>pir||T52291 probable DNA-binding protein AT-hook 2 [imported] - Arabidopsis
thaliana gi|2916772|emb|CAA11837.1| AT-hook protein 2
[Arabidopsis thaliana]
Length = 439
Score = 43.5 bits (101), Expect = 0.002
Identities = 28/69 (40%), Positives = 41/69 (58%), Gaps = 4/69 (5%)
Frame = -1
Query: 620 SAVQVIVGSFIADGKKSNSS--NLKSGP-PSMPSSQTLTFGSPVTPASPPT-SQGPSTES 453
S VQVIVGSF+ DG+K S ++ P P+ + L+FG P SP + Q S+ES
Sbjct: 329 SQVQVIVGSFVPDGRKQKQSAGRAQNTPEPASAPANMLSFGGVGGPGSPRSQGQQHSSES 388
Query: 452 SDDNGNSRP 426
S++N ++ P
Sbjct: 389 SEENESNSP 397
>emb|CAA10857.1| AT-hook protein 1 [Arabidopsis thaliana]
Length = 351
Score = 41.2 bits (95), Expect = 0.011
Identities = 27/82 (32%), Positives = 38/82 (45%), Gaps = 6/82 (7%)
Frame = -1
Query: 623 ASAVQVIVGSFIADGKKSNSSNLKSGPPSMPSSQTLTFGSPVTPASPPTSQGPSTESSDD 444
AS VQ++VGSF+ DG+K ++ S P + + S P S+G +ESS
Sbjct: 268 ASPVQIVVGSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPSSPQSRGTMSESSCG 327
Query: 443 NGNSRP------GLYNNASQPP 396
G+ P G YNN P
Sbjct: 328 GGHGSPIHQSTGGPYNNTINMP 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,263,134
Number of Sequences: 1393205
Number of extensions: 11573716
Number of successful extensions: 51072
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 45587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50374
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
