Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005243A_C01 KMC005243A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084832.1| ribosomal protein S8 [Lotus japonicus] gi|24212... 174 8e-43
sp|P59033|RR8_PHAAN Chloroplast 30S ribosomal protein S8 gi|2272... 154 1e-36
ref|NP_054534.1| ribosomal protein S8 [Nicotiana tabacum] gi|134... 147 8e-35
ref|NP_783266.1| ribosomal protein S8 [Atropa belladonna] gi|242... 146 2e-34
ref|NP_051093.1| ribosomal protein S8 [Arabidopsis thaliana] gi|... 145 5e-34
>ref|NP_084832.1| ribosomal protein S8 [Lotus japonicus]
gi|24212276|sp|Q9BBQ1|RR8_LOTJA Chloroplast 30S
ribosomal protein S8 gi|13359014|dbj|BAB33231.1|
ribosomal protein S8 [Lotus japonicus]
Length = 134
Score = 174 bits (441), Expect = 8e-43
Identities = 99/138 (71%), Positives = 107/138 (76%), Gaps = 3/138 (2%)
Frame = -3
Query: 531 MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSLFS 352
MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKS
Sbjct: 1 MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSFL- 59
Query: 351 FNSTI*KKYERII*NFFKFKTDQYPRSTNLL*LSKNFLE---LLGGMGIVILSTSRGIMT 181
+ +Y R +K + ST L + N+ + +LGGMGIVILSTSRGIMT
Sbjct: 60 ---VLTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMT 116
Query: 180 DREARLEKIGGEVLCYIW 127
DREARLEKIGGEVLCYIW
Sbjct: 117 DREARLEKIGGEVLCYIW 134
>sp|P59033|RR8_PHAAN Chloroplast 30S ribosomal protein S8 gi|22725689|gb|AAN04895.1|
ribosomal protein S8 [Vigna angularis]
Length = 134
Score = 154 bits (388), Expect = 1e-36
Identities = 83/135 (61%), Positives = 95/135 (69%)
Frame = -3
Query: 531 MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSLFS 352
MGKDTIA+IIT IRNADMN+K VQ+PFTNITE VKILLREGF+EN+RKHRE++K
Sbjct: 1 MGKDTIANIITYIRNADMNKKGMVQLPFTNITEKIVKILLREGFVENIRKHRENNKYFLV 60
Query: 351 FNSTI*KKYERII*NFFKFKTDQYPRSTNLL*LSKNFLELLGGMGIVILSTSRGIMTDRE 172
+ + NF K P + + +LGGMGIVILSTSRGIMTDRE
Sbjct: 61 LTLRYRRNRKESSKNFLNLKRISTP-GLRIYYNYQQIPRILGGMGIVILSTSRGIMTDRE 119
Query: 171 ARLEKIGGEVLCYIW 127
ARLEKIGGEVLCYIW
Sbjct: 120 ARLEKIGGEVLCYIW 134
>ref|NP_054534.1| ribosomal protein S8 [Nicotiana tabacum]
gi|134025|sp|P06363|RR8_TOBAC Chloroplast 30S ribosomal
protein S8 gi|70913|pir||R3NT8 ribosomal protein S8 -
common tobacco chloroplast gi|11863|emb|CAA77378.1|
ribosomal protein S8 [Nicotiana tabacum]
gi|225232|prf||1211235BP ribosomal protein S8
Length = 134
Score = 147 bits (372), Expect = 8e-35
Identities = 82/135 (60%), Positives = 94/135 (68%)
Frame = -3
Query: 531 MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSLFS 352
MG+DTIA+IITSIRNADM+RKR V+I TNITEN V+ILLREGFIENVRKHRE +K
Sbjct: 1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRKHREKNKYFLV 60
Query: 351 FNSTI*KKYERII*NFFKFKTDQYPRSTNLL*LSKNFLELLGGMGIVILSTSRGIMTDRE 172
+ +R N K P + + +LGGMGIVILSTSRGIMTDRE
Sbjct: 61 LTLRHRRNRKRPYRNILNLKRISRP-GLRIYSNYQRIPRILGGMGIVILSTSRGIMTDRE 119
Query: 171 ARLEKIGGEVLCYIW 127
ARLE IGGE+LCYIW
Sbjct: 120 ARLEGIGGEILCYIW 134
>ref|NP_783266.1| ribosomal protein S8 [Atropa belladonna]
gi|24212273|sp|Q8S8V8|RR8_ATRBE Chloroplast 30S
ribosomal protein S8 gi|20068366|emb|CAC88079.1|
ribosomal protein S8 [Atropa belladonna]
Length = 134
Score = 146 bits (369), Expect = 2e-34
Identities = 81/135 (60%), Positives = 95/135 (70%)
Frame = -3
Query: 531 MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSLFS 352
MG+DTIA+IITSIRNADM+RKR V+I TNITEN V+ILLREGFIENVRKH+E++K
Sbjct: 1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRKHQENNKYFLV 60
Query: 351 FNSTI*KKYERII*NFFKFKTDQYPRSTNLL*LSKNFLELLGGMGIVILSTSRGIMTDRE 172
+ +R N K P + + +LGGMGIVILSTSRGIMTDRE
Sbjct: 61 LTLRHRRNKKRPYRNILNLKRISRP-GLRIYSNYQRIPRILGGMGIVILSTSRGIMTDRE 119
Query: 171 ARLEKIGGEVLCYIW 127
ARLE IGGE+LCYIW
Sbjct: 120 ARLEGIGGEILCYIW 134
>ref|NP_051093.1| ribosomal protein S8 [Arabidopsis thaliana]
gi|6685916|sp|P56801|RR8_ARATH Chloroplast 30S ribosomal
protein S8 gi|5881729|dbj|BAA84420.1| ribosomal protein
S8 [Arabidopsis thaliana]
Length = 134
Score = 145 bits (365), Expect = 5e-34
Identities = 80/135 (59%), Positives = 95/135 (70%)
Frame = -3
Query: 531 MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSLFS 352
MGKDTIADIITSIRNADMNRK TV+I TNITE+ VKILLREGFIENVRKHRE+++
Sbjct: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 60
Query: 351 FNSTI*KKYERII*NFFKFKTDQYPRSTNLL*LSKNFLELLGGMGIVILSTSRGIMTDRE 172
+ + K P + S+ +LGG+GIVILSTS+GIMTDRE
Sbjct: 61 LTLRHRRNKKESYKTILNLKRISRP-GLRIYSNSQRIPRILGGIGIVILSTSQGIMTDRE 119
Query: 171 ARLEKIGGEVLCYIW 127
ARL++IGGE+LCYIW
Sbjct: 120 ARLKRIGGEILCYIW 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,016,467
Number of Sequences: 1393205
Number of extensions: 9774615
Number of successful extensions: 23084
Number of sequences better than 10.0: 270
Number of HSP's better than 10.0 without gapping: 22137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22860
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
