Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005237A_C01 KMC005237A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65485.1| putative GDSL-motif lipase/hydrolase [Arabidopsis... 244 5e-64
ref|NP_178536.1| putative GDSL-motif lipase/hydrolase; protein i... 243 1e-63
ref|NP_567758.1| putative APG protein; protein id: At4g26790.1, ... 215 3e-55
pir||T04802 hypothetical protein F10M23.130 - Arabidopsis thalia... 206 2e-52
ref|NP_181827.1| putative APG isolog protein; protein id: At2g42... 181 4e-45
>gb|AAM65485.1| putative GDSL-motif lipase/hydrolase [Arabidopsis thaliana]
Length = 350
Score = 244 bits (623), Expect = 5e-64
Identities = 118/163 (72%), Positives = 134/163 (81%)
Frame = +1
Query: 67 KLLLCTTLLLQLLCLVVAGGKVPAIIVFGDSSVDAGNNNFIETVARSNFQPYGRDFQGGK 246
K L L+ + V GK+PAIIVFGDSSVDAGNNN+I TVARSNF+PYGRDF GGK
Sbjct: 5 KSLFTILFLIAMSSTVTFAGKIPAIIVFGDSSVDAGNNNYIPTVARSNFEPYGRDFVGGK 64
Query: 247 PTGRFSNGRIATDFISEAFGIKPYVPAYLDPSYNISHFATGVAFASAATGYDNATSDVLS 426
PTGRF NG+IATDF+SEA G+KP +PAYLDPSYNIS FATGV FASAATGYDNATSDVLS
Sbjct: 65 PTGRFCNGKIATDFMSEALGLKPIIPAYLDPSYNISDFATGVTFASAATGYDNATSDVLS 124
Query: 427 VIPLWKQLEYYKAYQKKLSTYLGEKKAHDTITKSLHIISLGTN 555
V+PLWKQLEYYK YQ KL Y G+ +A +TI SL++IS+GTN
Sbjct: 125 VLPLWKQLEYYKEYQTKLKAYQGKDRATETIESSLYLISIGTN 167
>ref|NP_178536.1| putative GDSL-motif lipase/hydrolase; protein id: At2g04570.1,
supported by cDNA: 39762. [Arabidopsis thaliana]
gi|25336279|pir||A84459 probable GDSL-motif
lipase/hydrolase [imported] - Arabidopsis thaliana
gi|4587595|gb|AAD25823.1| putative GDSL-motif
lipase/hydrolase [Arabidopsis thaliana]
Length = 350
Score = 243 bits (619), Expect = 1e-63
Identities = 117/163 (71%), Positives = 133/163 (80%)
Frame = +1
Query: 67 KLLLCTTLLLQLLCLVVAGGKVPAIIVFGDSSVDAGNNNFIETVARSNFQPYGRDFQGGK 246
K L L+ + V GK+PAIIVFGDSSVDAGNNN+I TVARSNF+PYGRDF GGK
Sbjct: 5 KSLFTILFLIAMSSTVTFAGKIPAIIVFGDSSVDAGNNNYIPTVARSNFEPYGRDFVGGK 64
Query: 247 PTGRFSNGRIATDFISEAFGIKPYVPAYLDPSYNISHFATGVAFASAATGYDNATSDVLS 426
PTGRF NG+IATDF+SEA G+KP +PAYLDPSYNIS FATGV FASAATGYDNATSDVLS
Sbjct: 65 PTGRFCNGKIATDFMSEALGLKPIIPAYLDPSYNISDFATGVTFASAATGYDNATSDVLS 124
Query: 427 VIPLWKQLEYYKAYQKKLSTYLGEKKAHDTITKSLHIISLGTN 555
V+PLWKQLEYYK YQ KL Y G+ + +TI SL++IS+GTN
Sbjct: 125 VLPLWKQLEYYKEYQTKLKAYQGKDRGTETIESSLYLISIGTN 167
>ref|NP_567758.1| putative APG protein; protein id: At4g26790.1, supported by cDNA:
2574., supported by cDNA: gi_18252232 [Arabidopsis
thaliana] gi|18252233|gb|AAL61949.1| putative APG
protein [Arabidopsis thaliana]
gi|21387003|gb|AAM47905.1| putative APG protein
[Arabidopsis thaliana] gi|21554559|gb|AAM63613.1|
putative APG protein [Arabidopsis thaliana]
Length = 351
Score = 215 bits (548), Expect = 3e-55
Identities = 108/167 (64%), Positives = 132/167 (78%), Gaps = 1/167 (0%)
Frame = +1
Query: 58 QRKKLLLCTTLLLQLLCLVVAG-GKVPAIIVFGDSSVDAGNNNFIETVARSNFQPYGRDF 234
QR ++L L QLL + K PA+IVFGDS+VD+GNNN I TV +SNFQPYGRD+
Sbjct: 2 QRNRVLAFLLLAAQLLVKIPETCAKFPALIVFGDSTVDSGNNNQISTVLKSNFQPYGRDY 61
Query: 235 QGGKPTGRFSNGRIATDFISEAFGIKPYVPAYLDPSYNISHFATGVAFASAATGYDNATS 414
GK TGRFSNGRIA DFISE G+K VPAYLDP+YNI+ FATGV FASA TG DNATS
Sbjct: 62 FDGKATGRFSNGRIAPDFISEGLGLKNAVPAYLDPAYNIADFATGVCFASAGTGLDNATS 121
Query: 415 DVLSVIPLWKQLEYYKAYQKKLSTYLGEKKAHDTITKSLHIISLGTN 555
VLSV+PLWK++EYYK YQ +L +YLGE+KA++ I++SL++IS+GTN
Sbjct: 122 AVLSVMPLWKEVEYYKEYQTRLRSYLGEEKANEIISESLYLISIGTN 168
>pir||T04802 hypothetical protein F10M23.130 - Arabidopsis thaliana
gi|4455202|emb|CAB36525.1| putative APG protein
[Arabidopsis thaliana] gi|7269531|emb|CAB79534.1|
putative APG protein [Arabidopsis thaliana]
Length = 365
Score = 206 bits (523), Expect = 2e-52
Identities = 108/181 (59%), Positives = 132/181 (72%), Gaps = 15/181 (8%)
Frame = +1
Query: 58 QRKKLLLCTTLLLQLLCLVVAG-GKVPAIIVFGDSSVDAGNNNFIETVARSNFQPYGRDF 234
QR ++L L QLL + K PA+IVFGDS+VD+GNNN I TV +SNFQPYGRD+
Sbjct: 2 QRNRVLAFLLLAAQLLVKIPETCAKFPALIVFGDSTVDSGNNNQISTVLKSNFQPYGRDY 61
Query: 235 QGGKPTGRFSNGRIATDFISEAFGIKPYVPAYLDPSYNISHFATGVAFASAATGYDNATS 414
GK TGRFSNGRIA DFISE G+K VPAYLDP+YNI+ FATGV FASA TG DNATS
Sbjct: 62 FDGKATGRFSNGRIAPDFISEGLGLKNAVPAYLDPAYNIADFATGVCFASAGTGLDNATS 121
Query: 415 DVL--------------SVIPLWKQLEYYKAYQKKLSTYLGEKKAHDTITKSLHIISLGT 552
VL SV+PLWK++EYYK YQ +L +YLGE+KA++ I++SL++IS+GT
Sbjct: 122 AVLISDMLSLNCHRFLKSVMPLWKEVEYYKEYQTRLRSYLGEEKANEIISESLYLISIGT 181
Query: 553 N 555
N
Sbjct: 182 N 182
>ref|NP_181827.1| putative APG isolog protein; protein id: At2g42990.1 [Arabidopsis
thaliana] gi|25336313|pir||F84860 probable GDSL-motif
lipase/hydrolase [imported] - Arabidopsis thaliana
gi|4512657|gb|AAD21711.1| putative APG isolog protein
[Arabidopsis thaliana] gi|20197866|gb|AAM15290.1|
putative APG isolog protein [Arabidopsis thaliana]
Length = 303
Score = 181 bits (460), Expect = 4e-45
Identities = 82/120 (68%), Positives = 102/120 (84%)
Frame = +1
Query: 196 VARSNFQPYGRDFQGGKPTGRFSNGRIATDFISEAFGIKPYVPAYLDPSYNISHFATGVA 375
+AR+NF+PYGRDF GG+ TGRF NGR+++DF SEA+G+KP VPAYLDPSYNIS FATGV
Sbjct: 1 MARANFEPYGRDFPGGRATGRFCNGRLSSDFTSEAYGLKPTVPAYLDPSYNISDFATGVC 60
Query: 376 FASAATGYDNATSDVLSVIPLWKQLEYYKAYQKKLSTYLGEKKAHDTITKSLHIISLGTN 555
FASA TGYDN+T+DVL VIPLWK++EY+K YQ LS YLG ++A I +SL+I+S+GTN
Sbjct: 61 FASAGTGYDNSTADVLGVIPLWKEVEYFKEYQSNLSAYLGHRRAAKIIRESLYIVSIGTN 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,027,185
Number of Sequences: 1393205
Number of extensions: 12250043
Number of successful extensions: 38132
Number of sequences better than 10.0: 265
Number of HSP's better than 10.0 without gapping: 36222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37773
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
