Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005236A_C01 KMC005236A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174177.1| GTP-binding protein, putative; protein id: At1g... 123 3e-36
gb|AAF24551.2|AC007508_14 F1K23.21 [Arabidopsis thaliana] 123 3e-36
ref|NP_180943.1| GTP-binding protein, putative; protein id: At2g... 117 4e-34
sp|Q40521|R11B_TOBAC Ras-related protein Rab11B gi|7438406|pir||... 126 2e-28
pir||T12097 GTP-binding protein, ras-like (clone vfa-ypt3a) - fa... 126 2e-28
>ref|NP_174177.1| GTP-binding protein, putative; protein id: At1g28550.1 [Arabidopsis
thaliana] gi|6560749|gb|AAF16749.1|AC010155_2 F3M18.2
[Arabidopsis thaliana]
Length = 218
Score = 123 bits (308), Expect(2) = 3e-36
Identities = 60/69 (86%), Positives = 66/69 (94%)
Frame = -3
Query: 595 IMLVGNKADLRHLRAVSTDDAKGFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSK 416
IMLVGNKADLRHLRA+ST++AK FAERENTFFMETSALE++NVDNAFTEVLTQIYRVVSK
Sbjct: 121 IMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSK 180
Query: 415 KTLEIGDEP 389
K LE GD+P
Sbjct: 181 KALEAGDDP 189
Score = 50.4 bits (119), Expect(2) = 3e-36
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -1
Query: 384 ALPKGQTINVGSKDDVSAVKKVGCCSA 304
ALPKGQ INVG +DD+SAVKK GCCSA
Sbjct: 192 ALPKGQMINVGGRDDISAVKKPGCCSA 218
>gb|AAF24551.2|AC007508_14 F1K23.21 [Arabidopsis thaliana]
Length = 212
Score = 123 bits (308), Expect(2) = 3e-36
Identities = 60/69 (86%), Positives = 66/69 (94%)
Frame = -3
Query: 595 IMLVGNKADLRHLRAVSTDDAKGFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSK 416
IMLVGNKADLRHLRA+ST++AK FAERENTFFMETSALE++NVDNAFTEVLTQIYRVVSK
Sbjct: 115 IMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSK 174
Query: 415 KTLEIGDEP 389
K LE GD+P
Sbjct: 175 KALEAGDDP 183
Score = 50.4 bits (119), Expect(2) = 3e-36
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -1
Query: 384 ALPKGQTINVGSKDDVSAVKKVGCCSA 304
ALPKGQ INVG +DD+SAVKK GCCSA
Sbjct: 186 ALPKGQMINVGGRDDISAVKKPGCCSA 212
>ref|NP_180943.1| GTP-binding protein, putative; protein id: At2g33870.1 [Arabidopsis
thaliana] gi|25294124|pir||F84750 probable GTP-binding
protein [imported] - Arabidopsis thaliana
gi|1707014|gb|AAC69136.1| putative GTP-binding protein
[Arabidopsis thaliana]
Length = 219
Score = 117 bits (292), Expect(2) = 4e-34
Identities = 56/69 (81%), Positives = 64/69 (92%)
Frame = -3
Query: 595 IMLVGNKADLRHLRAVSTDDAKGFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSK 416
IMLVGNKADL HLRA+ST++ K FAERENTFFMETSALE++NV+NAFTEVLTQIYRVVSK
Sbjct: 122 IMLVGNKADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSK 181
Query: 415 KTLEIGDEP 389
K L+ GD+P
Sbjct: 182 KALDAGDDP 190
Score = 49.7 bits (117), Expect(2) = 4e-34
Identities = 22/26 (84%), Positives = 24/26 (91%)
Frame = -1
Query: 384 ALPKGQTINVGSKDDVSAVKKVGCCS 307
ALPKGQ INVGS+DDVSAVKK GCC+
Sbjct: 193 ALPKGQMINVGSRDDVSAVKKSGCCA 218
>sp|Q40521|R11B_TOBAC Ras-related protein Rab11B gi|7438406|pir||T03620 GTP-binding
protein Rab11b - common tobacco gi|623578|gb|AAA74113.1|
putative
Length = 217
Score = 126 bits (316), Expect = 2e-28
Identities = 61/75 (81%), Positives = 70/75 (93%)
Frame = -3
Query: 595 IMLVGNKADLRHLRAVSTDDAKGFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSK 416
IMLVGNKADLRHLRAVST+DAK FAERENTFFMETSALESLNV+NAFTEVLT+IY+VV +
Sbjct: 122 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCR 181
Query: 415 KTLEIGDEPCSLAQG 371
K LE+GD+P +L +G
Sbjct: 182 KALEVGDDPAALPKG 196
Score = 57.8 bits (138), Expect = 1e-07
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = -1
Query: 429 ELLVRRRSRSGMSPAALPKGQTINVGSKDDVSAVKKVGCCSA 304
+++ R+ G PAALPKGQTINVG KDDVSAVKKVGCCS+
Sbjct: 177 KVVCRKALEVGDDPAALPKGQTINVG-KDDVSAVKKVGCCSS 217
>pir||T12097 GTP-binding protein, ras-like (clone vfa-ypt3a) - fava bean
(fragment) gi|452357|emb|CAA82708.1| guanine nucleotide
regulatory protein [Vicia faba] gi|1098294|prf||2115367B
small GTP-binding protein
Length = 207
Score = 126 bits (316), Expect = 2e-28
Identities = 62/75 (82%), Positives = 70/75 (92%)
Frame = -3
Query: 595 IMLVGNKADLRHLRAVSTDDAKGFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSK 416
+MLVGNKADLRHLRAVST+D+ FAERENTFFMETSALESLNV++AFTEVLTQIYRVVSK
Sbjct: 111 VMLVGNKADLRHLRAVSTEDSTAFAERENTFFMETSALESLNVESAFTEVLTQIYRVVSK 170
Query: 415 KTLEIGDEPCSLAQG 371
K LEIGD+P +L +G
Sbjct: 171 KALEIGDDPAALPKG 185
Score = 59.7 bits (143), Expect = 3e-08
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = -1
Query: 399 GMSPAALPKGQTINVGSKDDVSAVKKVGCCSA 304
G PAALPKGQTINVGS+DDVSAVKK GCCSA
Sbjct: 176 GDDPAALPKGQTINVGSRDDVSAVKKGGCCSA 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,092,703
Number of Sequences: 1393205
Number of extensions: 10654721
Number of successful extensions: 30831
Number of sequences better than 10.0: 1022
Number of HSP's better than 10.0 without gapping: 29966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30782
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
