Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005235A_C01 KMC005235A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565443.1| expressed protein; protein id: At2g18910.1, sup... 77 1e-13
pir||T01619 hypothetical protein At2g18910 [imported] - Arabidop... 63 2e-09
gb|EAA15422.1| hypothetical protein [Plasmodium yoelii yoelii] 32 3.4
dbj|BAC32408.1| unnamed protein product [Mus musculus] gi|288789... 32 4.4
ref|XP_208754.1| hypothetical protein XP_208754 [Homo sapiens] g... 32 4.4
>ref|NP_565443.1| expressed protein; protein id: At2g18910.1, supported by cDNA:
3350., supported by cDNA: gi_16649042, supported by
cDNA: gi_20259999 [Arabidopsis thaliana]
gi|16649043|gb|AAL24373.1| Unknown protein [Arabidopsis
thaliana] gi|20197034|gb|AAC09038.2| expressed protein
[Arabidopsis thaliana] gi|20260000|gb|AAM13347.1|
unknown protein [Arabidopsis thaliana]
gi|21592877|gb|AAM64827.1| unknown [Arabidopsis
thaliana]
Length = 131
Score = 77.0 bits (188), Expect = 1e-13
Identities = 35/48 (72%), Positives = 39/48 (80%)
Frame = -1
Query: 520 SSLDDHLARWFGLNQSKYQWALDDYYESKGMEKGDVKVKEISSKVQSV 377
SS+DDHL RWFGLNQSKYQWALD+YYESK + VK KE+ KVQSV
Sbjct: 84 SSVDDHLVRWFGLNQSKYQWALDEYYESKESDMKTVKAKEMPGKVQSV 131
>pir||T01619 hypothetical protein At2g18910 [imported] - Arabidopsis thaliana
Length = 753
Score = 63.2 bits (152), Expect = 2e-09
Identities = 26/29 (89%), Positives = 28/29 (95%)
Frame = -1
Query: 520 SSLDDHLARWFGLNQSKYQWALDDYYESK 434
SS+DDHL RWFGLNQSKYQWALD+YYESK
Sbjct: 707 SSVDDHLVRWFGLNQSKYQWALDEYYESK 735
>gb|EAA15422.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 480
Score = 32.3 bits (72), Expect = 3.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +3
Query: 36 HSKPCSEGN---NQFVSLTKYKYRNTSEVPNPKQLRLKLQQKNKTSAPENRLINNQTQLQ 206
+S SEG N+ K K+ SE P K++ ++KN+T I N +
Sbjct: 91 YSSQLSEGEEDKNRAKKKEKKKFHTNSEKPKKKKIIFSFKKKNETKDSNTSYIKNFEMIS 150
Query: 207 EMEKHH 224
+ HH
Sbjct: 151 DRNDHH 156
>dbj|BAC32408.1| unnamed protein product [Mus musculus] gi|28878990|gb|AAH48158.1|
Unknown (protein for MGC:61221) [Mus musculus]
Length = 207
Score = 32.0 bits (71), Expect = 4.4
Identities = 13/44 (29%), Positives = 26/44 (58%)
Frame = -1
Query: 514 LDDHLARWFGLNQSKYQWALDDYYESKGMEKGDVKVKEISSKVQ 383
L + +A G++ KYQ+A+D+YY K E+ + + +S + +
Sbjct: 112 LGEKIASVLGISTPKYQYAIDEYYRMKKEEEEEEEENRMSEEAE 155
>ref|XP_208754.1| hypothetical protein XP_208754 [Homo sapiens]
gi|27734699|ref|NP_775878.1| chromosome 14 open reading
frame 24 [Homo sapiens] gi|20810592|gb|AAH29559.1|
Similar to LOC161200 [Homo sapiens]
gi|21755596|dbj|BAC04716.1| unnamed protein product
[Homo sapiens]
Length = 213
Score = 32.0 bits (71), Expect = 4.4
Identities = 13/44 (29%), Positives = 26/44 (58%)
Frame = -1
Query: 514 LDDHLARWFGLNQSKYQWALDDYYESKGMEKGDVKVKEISSKVQ 383
L + +A G++ KYQ+A+D+YY K E+ + + +S + +
Sbjct: 117 LGEKIASVLGISTPKYQYAIDEYYRMKKEEEEEEEENRMSEEAE 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,063,624
Number of Sequences: 1393205
Number of extensions: 8921286
Number of successful extensions: 21548
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21533
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
