Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005231A_C01 KMC005231A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563622.1| expressed protein; protein id: At1g01230.1, sup... 67 1e-10
ref|NP_199015.1| putative protein; protein id: At5g42000.1 [Arab... 66 2e-10
gb|AAL69388.1|AF462225_1 unknown [Narcissus pseudonarcissus] 65 3e-10
pir||E86142 F6F3.4 protein - Arabidopsis thaliana gi|9665157|gb|... 52 3e-06
dbj|BAC55821.1| OSJNBb0062P14.15 [Oryza sativa (japonica cultiva... 51 7e-06
>ref|NP_563622.1| expressed protein; protein id: At1g01230.1, supported by cDNA:
13874., supported by cDNA: gi_13430649 [Arabidopsis
thaliana] gi|13430650|gb|AAK25947.1|AF360237_1 unknown
protein [Arabidopsis thaliana]
gi|14532824|gb|AAK64094.1| unknown protein [Arabidopsis
thaliana]
Length = 157
Score = 67.0 bits (162), Expect = 1e-10
Identities = 30/39 (76%), Positives = 36/39 (91%)
Frame = -1
Query: 510 TTDYQNPMLFFNTVAVIVLVVAKFPNMHKLRIFGIHADK 394
TTDY++P LF NT+AV+VLVVAKFPNMHK+RIFGI+ DK
Sbjct: 119 TTDYRHPWLFLNTLAVMVLVVAKFPNMHKVRIFGINGDK 157
>ref|NP_199015.1| putative protein; protein id: At5g42000.1 [Arabidopsis thaliana]
gi|9757945|dbj|BAB08433.1|
gene_id:MJC20.10~pir||T39307~similar to unknown protein
[Arabidopsis thaliana]
Length = 154
Score = 66.2 bits (160), Expect = 2e-10
Identities = 29/39 (74%), Positives = 36/39 (91%)
Frame = -1
Query: 510 TTDYQNPMLFFNTVAVIVLVVAKFPNMHKLRIFGIHADK 394
TTDYQ+PMLF NT+AV V+VVAKFP+MHK+RIFGI+ D+
Sbjct: 116 TTDYQHPMLFLNTLAVFVMVVAKFPHMHKVRIFGINGDQ 154
>gb|AAL69388.1|AF462225_1 unknown [Narcissus pseudonarcissus]
Length = 102
Score = 65.5 bits (158), Expect = 3e-10
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1
Query: 510 TTDYQNPMLFFNTVAVIVLVVAKFPNMHKLRIFGIHAD 397
TTDYQNPML NT+AV +LVVAK PNMHK+RIFGI+ D
Sbjct: 64 TTDYQNPMLLLNTLAVFILVVAKLPNMHKVRIFGINGD 101
>pir||E86142 F6F3.4 protein - Arabidopsis thaliana
gi|9665157|gb|AAF97341.1|AC023628_22 Unknown protein
[Arabidopsis thaliana]
Length = 193
Score = 52.4 bits (124), Expect = 3e-06
Identities = 23/29 (79%), Positives = 27/29 (92%)
Frame = -1
Query: 510 TTDYQNPMLFFNTVAVIVLVVAKFPNMHK 424
TTDY++P LF NT+AV+VLVVAKFPNMHK
Sbjct: 119 TTDYRHPWLFLNTLAVMVLVVAKFPNMHK 147
>dbj|BAC55821.1| OSJNBb0062P14.15 [Oryza sativa (japonica cultivar-group)]
Length = 178
Score = 51.2 bits (121), Expect = 7e-06
Identities = 22/28 (78%), Positives = 25/28 (88%)
Frame = -1
Query: 507 TDYQNPMLFFNTVAVIVLVVAKFPNMHK 424
TDY+ PMLF NT+AV+VLVVAK PNMHK
Sbjct: 142 TDYKQPMLFLNTIAVLVLVVAKLPNMHK 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,034,172
Number of Sequences: 1393205
Number of extensions: 8005477
Number of successful extensions: 19460
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 18725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19431
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
