Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005210A_C01 KMC005210A_c01
(652 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568497.1| putative protein; protein id: At5g27560.1, supp... 167 9e-41
ref|ZP_00072256.1| hypothetical protein [Trichodesmium erythraeu... 54 2e-06
ref|NP_683011.1| ORF_ID:tlr2221~hypothetical protein [Thermosyne... 49 4e-05
gb|ZP_00112279.1| hypothetical protein [Nostoc punctiforme] 49 8e-05
ref|NP_440546.1| unknown protein [Synechocystis sp. PCC 6803] gi... 47 2e-04
>ref|NP_568497.1| putative protein; protein id: At5g27560.1, supported by cDNA:
gi_13877992, supported by cDNA: gi_17104720 [Arabidopsis
thaliana] gi|13877993|gb|AAK44074.1|AF370259_1 unknown
protein [Arabidopsis thaliana]
gi|17104721|gb|AAL34249.1| unknown protein [Arabidopsis
thaliana]
Length = 341
Score = 167 bits (424), Expect = 9e-41
Identities = 89/143 (62%), Positives = 105/143 (73%), Gaps = 1/143 (0%)
Frame = -2
Query: 651 IVPDYQMLEYVQKIASNLSNDPPTPLIMWNPRLVSEDVGVGFNVRNLRRYFLSTFTTVYY 472
+VPDYQMLEYV+KIA+ L++DPP PLIMWNPRL+SE+VGVGFNVR LRRYFLS+FTTVY
Sbjct: 202 VVPDYQMLEYVEKIANGLADDPPRPLIMWNPRLISEEVGVGFNVRKLRRYFLSSFTTVYS 261
Query: 471 MRPMPFGAIFRCYPLLWKVFSDDKDRPNRYLS*KG-IYQPSLMLKILRCYLPMTEQKSRG 295
MRP+ GA+FRCYP WKVF D+KDRP RYL K I +P + L E+KS
Sbjct: 262 MRPLAAGAVFRCYPGKWKVFYDNKDRPGRYLLAKELIGRPD--AEDLEIIYGGVEEKSE- 318
Query: 294 RGKFV*QSAQASFSSINRFMKAM 226
G + A FSSINRFMK+M
Sbjct: 319 EGPSLMSQAAGIFSSINRFMKSM 341
>ref|ZP_00072256.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 253
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -2
Query: 606 SNLSNDPPTPLIMWNPRLVSED-VGVGFNVRNLRRYFLSTFTTVYYMRPMPFGAIFRCYP 430
SNL+ D P+IM P+L VG+G+ R LR F+ T + YY+R + A++RCYP
Sbjct: 123 SNLAGD--RPVIMLIPKLEDVSIVGIGYAARQLRERFIKTIESCYYIRSLGGAALYRCYP 180
Query: 429 LLWKVFSDD 403
W+V+ ++
Sbjct: 181 SPWQVWLEE 189
>ref|NP_683011.1| ORF_ID:tlr2221~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22295948|dbj|BAC09773.1|
ORF_ID:tlr2221~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 232
Score = 49.3 bits (116), Expect = 4e-05
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = -2
Query: 579 PLIMWNPRLVSEDV-GVGFNVRNLRRYFLSTFTTVYYMRPMPFGAI-FRCYPLLWKVFSD 406
P I+ NPRL V G+G+ R LR FL+T YY+RP+ I +RCYP W+++
Sbjct: 125 PFILLNPRLQDVAVVGIGYAGRQLRERFLNTLEPCYYLRPLAETVILWRCYPQAWQIWQY 184
Query: 405 DKDRP 391
+ P
Sbjct: 185 RETAP 189
>gb|ZP_00112279.1| hypothetical protein [Nostoc punctiforme]
Length = 244
Score = 48.5 bits (114), Expect = 8e-05
Identities = 42/148 (28%), Positives = 67/148 (44%), Gaps = 6/148 (4%)
Frame = -2
Query: 651 IVPDYQMLEYVQKIASNLSNDPPTPLIMWNPRLV-SEDVGVGFNVRNLRRYFLSTFTTVY 475
I P + V+K+ + + P++ NPRL S VG+G+ R R F +T + Y
Sbjct: 108 IAPTSVEVPQVEKLCQEIGD---RPVVFLNPRLEDSGTVGIGYAARQTRLRFTNTIESCY 164
Query: 474 YMRPM-PFGAIFRCYPLLWKVFSDDKDRPNRYLS*KGIYQPSLMLKILRCYLPMTEQKSR 298
Y+RP+ A+ RCYP W+V +L G YQ L + + +
Sbjct: 165 YLRPIDEQSALSRCYPGQWEV----------WLETDGEYQRIAELPTKPSGDDLDQILLK 214
Query: 297 GRGKFV*QSAQAS----FSSINRFMKAM 226
G+ + +A A F S+ RF+KA+
Sbjct: 215 GQPQTTTDAAPARKPNVFRSLQRFLKAL 242
>ref|NP_440546.1| unknown protein [Synechocystis sp. PCC 6803] gi|7459406|pir||S75312
hypothetical protein slr1702 - Synechocystis sp. (strain
PCC 6803) gi|1652303|dbj|BAA17226.1|
ORF_ID:slr1702~unknown protein [Synechocystis sp. PCC
6803]
Length = 251
Score = 47.4 bits (111), Expect = 2e-04
Identities = 27/80 (33%), Positives = 44/80 (54%), Gaps = 1/80 (1%)
Frame = -2
Query: 651 IVPDYQMLEYVQKIASNLSNDPPTPLIMWNPRLVSED-VGVGFNVRNLRRYFLSTFTTVY 475
+ P ++ V+K+ L+ D P L++ P+L VG+G+ R LR+ FLST + Y
Sbjct: 110 VSPSAVEVQSVEKLCE-LAGDRPVVLLI--PQLEDVSIVGIGYAARQLRQRFLSTLFSAY 166
Query: 474 YMRPMPFGAIFRCYPLLWKV 415
Y RP+ + R +P W+V
Sbjct: 167 YFRPLDGAVVLRSHPSRWQV 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,420,600
Number of Sequences: 1393205
Number of extensions: 12841787
Number of successful extensions: 29160
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 28313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29142
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
