Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005205A_C01 KMC005205A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181397.1| unknown protein; protein id: At2g38630.1 [Arabi... 116 2e-25
gb|AAO42261.1| unknown protein [Arabidopsis thaliana] gi|2897323... 116 2e-25
pir||T47578 hypothetical protein F24B22.150 - Arabidopsis thalia... 110 2e-23
ref|NP_566994.1| putative protein; protein id: At3g54190.1, supp... 110 2e-23
dbj|BAB64834.1| B1148D12.19 [Oryza sativa (japonica cultivar-gro... 85 6e-16
>ref|NP_181397.1| unknown protein; protein id: At2g38630.1 [Arabidopsis thaliana]
gi|25344227|pir||D84807 hypothetical protein At2g38630
[imported] - Arabidopsis thaliana
gi|3786009|gb|AAC67355.1| unknown protein [Arabidopsis
thaliana]
Length = 466
Score = 116 bits (290), Expect = 2e-25
Identities = 60/92 (65%), Positives = 70/92 (75%)
Frame = -2
Query: 584 EGNAGSIYVSTLFTGKCLAKIRASNSFPMEDNCSCCETSSGNSCNSRKRKHASKIRSTVA 405
EGNAGSI +S + TGKCLAKI+A+N P E++CS + GNS S+ RS VA
Sbjct: 386 EGNAGSINISNILTGKCLAKIKANNGPPKEEDCSSSDL--GNS---------SRRRSAVA 434
Query: 404 EALEDITALFYDEDRNEIYTGNRHGLVHVWSN 309
EALEDITALFYDE+RNEIYTGNRHGL+HVWSN
Sbjct: 435 EALEDITALFYDEERNEIYTGNRHGLLHVWSN 466
>gb|AAO42261.1| unknown protein [Arabidopsis thaliana] gi|28973237|gb|AAO63943.1|
unknown protein [Arabidopsis thaliana]
Length = 467
Score = 116 bits (290), Expect = 2e-25
Identities = 60/92 (65%), Positives = 70/92 (75%)
Frame = -2
Query: 584 EGNAGSIYVSTLFTGKCLAKIRASNSFPMEDNCSCCETSSGNSCNSRKRKHASKIRSTVA 405
EGNAGSI +S + TGKCLAKI+A+N P E++CS + GNS S+ RS VA
Sbjct: 387 EGNAGSINISNILTGKCLAKIKANNGPPKEEDCSSSDL--GNS---------SRRRSAVA 435
Query: 404 EALEDITALFYDEDRNEIYTGNRHGLVHVWSN 309
EALEDITALFYDE+RNEIYTGNRHGL+HVWSN
Sbjct: 436 EALEDITALFYDEERNEIYTGNRHGLLHVWSN 467
>pir||T47578 hypothetical protein F24B22.150 - Arabidopsis thaliana
gi|6822065|emb|CAB70993.1| putative protein [Arabidopsis
thaliana]
Length = 454
Score = 110 bits (274), Expect = 2e-23
Identities = 58/92 (63%), Positives = 68/92 (73%)
Frame = -2
Query: 584 EGNAGSIYVSTLFTGKCLAKIRASNSFPMEDNCSCCETSSGNSCNSRKRKHASKIRSTVA 405
EGNAGSI +S + TGKCLAKI S+ P +D E+SS N K++ + R+ VA
Sbjct: 372 EGNAGSINISNILTGKCLAKITPSSGPPKDD-----ESSSSNCMG----KNSKQRRNAVA 422
Query: 404 EALEDITALFYDEDRNEIYTGNRHGLVHVWSN 309
EALEDITALFYDE+RNEIYTGNRHGLVHVWSN
Sbjct: 423 EALEDITALFYDEERNEIYTGNRHGLVHVWSN 454
>ref|NP_566994.1| putative protein; protein id: At3g54190.1, supported by cDNA:
gi_13430701, supported by cDNA: gi_16226833 [Arabidopsis
thaliana] gi|13430702|gb|AAK25973.1|AF360263_1 unknown
protein [Arabidopsis thaliana]
gi|14532904|gb|AAK64134.1| unknown protein [Arabidopsis
thaliana] gi|16226834|gb|AAL16275.1|AF428345_1
AT3g54190/F24B22_150 [Arabidopsis thaliana]
Length = 467
Score = 110 bits (274), Expect = 2e-23
Identities = 58/92 (63%), Positives = 68/92 (73%)
Frame = -2
Query: 584 EGNAGSIYVSTLFTGKCLAKIRASNSFPMEDNCSCCETSSGNSCNSRKRKHASKIRSTVA 405
EGNAGSI +S + TGKCLAKI S+ P +D E+SS N K++ + R+ VA
Sbjct: 385 EGNAGSINISNILTGKCLAKITPSSGPPKDD-----ESSSSNCMG----KNSKQRRNAVA 435
Query: 404 EALEDITALFYDEDRNEIYTGNRHGLVHVWSN 309
EALEDITALFYDE+RNEIYTGNRHGLVHVWSN
Sbjct: 436 EALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
>dbj|BAB64834.1| B1148D12.19 [Oryza sativa (japonica cultivar-group)]
Length = 444
Score = 85.1 bits (209), Expect = 6e-16
Identities = 47/92 (51%), Positives = 56/92 (60%)
Frame = -2
Query: 584 EGNAGSIYVSTLFTGKCLAKIRASNSFPMEDNCSCCETSSGNSCNSRKRKHASKIRSTVA 405
E NA SI +S + TGKCLAKI+A N ++ SK +ST +
Sbjct: 374 EENACSINISEILTGKCLAKIKAGNL---------------------NKQRVSKFQSTPS 412
Query: 404 EALEDITALFYDEDRNEIYTGNRHGLVHVWSN 309
EAL DITAL+YDE+R EIYTGNR GLVHVWSN
Sbjct: 413 EALGDITALYYDEEREEIYTGNRLGLVHVWSN 444
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,899,897
Number of Sequences: 1393205
Number of extensions: 10754521
Number of successful extensions: 28737
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28708
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
