Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005190A_C01 KMC005190A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN09870.1| hypothetical protein [Oryza sativa (japonica cult... 40 0.024
gb|AAN05382.1| hypothetical protein [Oryza sativa (japonica cult... 40 0.024
ref|NP_506106.1| Putative nuclear protein, nematode specific [Ca... 39 0.069
ref|NP_506102.1| Putative mitochondrial protein, nematode specif... 37 0.26
gb|AAO51859.1| similar to Homo sapiens (Human). Mucin 2 precurso... 37 0.26
>gb|AAN09870.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 300
Score = 40.0 bits (92), Expect = 0.024
Identities = 25/67 (37%), Positives = 30/67 (44%)
Frame = +2
Query: 344 HPLHLLLLQPNPTCNQNPTPTPLPHAIEGSERPKPQPTYNRTFRASRTIVCDGDDGGARA 523
HP L P+P C ++P P P+P A G P P P R T G GA A
Sbjct: 191 HPPGLATPSPSPVCKKSPVPIPIP-AHGGRIYPVPVP-----MRVRGTRQRHGVSDGAAA 244
Query: 524 WARRSSP 544
W+RR P
Sbjct: 245 WSRRRRP 251
>gb|AAN05382.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 315
Score = 40.0 bits (92), Expect = 0.024
Identities = 25/67 (37%), Positives = 30/67 (44%)
Frame = +2
Query: 344 HPLHLLLLQPNPTCNQNPTPTPLPHAIEGSERPKPQPTYNRTFRASRTIVCDGDDGGARA 523
HP L P+P C ++P P P+P A G P P P R T G GA A
Sbjct: 175 HPPGLATPSPSPVCKKSPVPIPIP-AHGGRIYPVPVP-----MRVRGTRQRHGVSDGAAA 228
Query: 524 WARRSSP 544
W+RR P
Sbjct: 229 WSRRRRP 235
>ref|NP_506106.1| Putative nuclear protein, nematode specific [Caenorhabditis
elegans] gi|15718259|emb|CAA99866.2| Hypothetical
protein K01D12.7 [Caenorhabditis elegans]
Length = 136
Score = 38.5 bits (88), Expect = 0.069
Identities = 29/77 (37%), Positives = 32/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 245 TKKPARGRVIPTCCQTRNRGTTRWLKSRLVHKPHPLHLLLLQPNPTCNQ-NPTPTPLPHA 421
TK P ++ T C RN K V PLH L LQP P N P PL
Sbjct: 42 TKTPILTLILMTNCSERNHQ-----KPVQVQPKQPLHRLRLQPQPHQNLLQHLPQPLEST 96
Query: 422 IEGSERPKPQPTYNRTF 472
S RP +P NRTF
Sbjct: 97 NTRSRRPIRRPMPNRTF 113
>ref|NP_506102.1| Putative mitochondrial protein, nematode specific [Caenorhabditis
elegans] gi|14530514|emb|CAA99878.2| Hypothetical
protein K01D12.15 [Caenorhabditis elegans]
Length = 118
Score = 36.6 bits (83), Expect = 0.26
Identities = 28/78 (35%), Positives = 32/78 (40%), Gaps = 1/78 (1%)
Frame = +2
Query: 245 TKKPARGRVIPTCCQTRNRGTTRWLKSRLVHKPHPLHLLLLQPNPTCN-QNPTPTPLPHA 421
TK P ++ T C +N K V PLH L LQP P N P PL
Sbjct: 42 TKTPILTLILTTNCSEKNHQ-----KPVQVQPKQPLHRLRLQPQPHQNLLQHLPQPLEST 96
Query: 422 IEGSERPKPQPTYNRTFR 475
S RP +P NRT R
Sbjct: 97 NTRSRRPIRRPMPNRTSR 114
>gb|AAO51859.1| similar to Homo sapiens (Human). Mucin 2 precursor (Intestinal
mucin 2) [Dictyostelium discoideum]
Length = 709
Score = 36.6 bits (83), Expect = 0.26
Identities = 24/78 (30%), Positives = 31/78 (38%)
Frame = +1
Query: 244 NQKTSKGKSNSNMLPDQKQGNHQMVKITPCP*TPSASSSSSPTKPHLQSEPNPNPTPTCN 423
N TS S P Q Q TP TP+ + + +PT P P PTPT
Sbjct: 372 NTPTSTPTQTSTQTPTPTQTPTQTPTQTPTTQTPTPTPTQTPT-PTQTPTPTQTPTPTPT 430
Query: 424 RRFRASKTPTHLQPNVQS 477
+ + TPT Q Q+
Sbjct: 431 QTHTPTPTPTQTQTQTQT 448
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,224,293
Number of Sequences: 1393205
Number of extensions: 16374376
Number of successful extensions: 79839
Number of sequences better than 10.0: 196
Number of HSP's better than 10.0 without gapping: 59537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74747
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
