Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005175A_C01 KMC005175A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana] 54 1e-06
ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12);... 54 1e-06
gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thalian... 54 1e-06
gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populu... 52 3e-06
ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11);... 51 9e-06
>gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 248
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = -2
Query: 517 TLTGIVYSDKTLAIYHVDQVLVPLDFSKPKSPAPAPTLANAPESDKDNSSDEDGDDQGA 341
T++G VYSD LA+Y VD+VL+P P+ PAPAP + + K + SD DD A
Sbjct: 160 TVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPSVSKSKKKKDDSDSSSDDSPA 218
>ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12); protein id:
At5g60490.1, supported by cDNA: 15239., supported by
cDNA: gi_15294287 [Arabidopsis thaliana]
gi|9757751|dbj|BAB08232.1| contains similarity to
surface protein~gene_id:MUF9.12 [Arabidopsis thaliana]
Length = 249
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = -2
Query: 517 TLTGIVYSDKTLAIYHVDQVLVPLDFSKPKSPAPAPTLANAPESDKDNSSDEDGDDQGA 341
T++G VYSD LA+Y VD+VL+P P+ PAPAP + + K + SD DD A
Sbjct: 161 TVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPSVSKSKKKKDDSDSSSDDSPA 219
>gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thaliana]
gi|23308259|gb|AAN18099.1| At5g60490/muf9_140
[Arabidopsis thaliana]
Length = 239
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = -2
Query: 517 TLTGIVYSDKTLAIYHVDQVLVPLDFSKPKSPAPAPTLANAPESDKDNSSDEDGDDQGA 341
T++G VYSD LA+Y VD+VL+P P+ PAPAP + + K + SD DD A
Sbjct: 161 TVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPSVSKSKKKKDDSDSSSDDSPA 219
>gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populus x canescens]
Length = 240
Score = 52.4 bits (124), Expect = 3e-06
Identities = 29/80 (36%), Positives = 42/80 (52%)
Frame = -2
Query: 517 TLTGIVYSDKTLAIYHVDQVLVPLDFSKPKSPAPAPTLANAPESDKDNSSDEDGDDQGAK 338
+++G +Y+D LA++ VD+VL+PLD PK P PAP APE K S + A
Sbjct: 158 SVSGTIYTDNQLAVHQVDKVLLPLDIFTPKPPTPAP----APEKPKKRSKAAASPESPAD 213
Query: 337 KATSGAIQLISVQGTMLMSL 278
TSGA+ + + L
Sbjct: 214 --TSGAVSFTVLNNVVFFGL 231
>ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11); protein id:
At5g03170.1, supported by cDNA: 14950., supported by
cDNA: gi_13430541 [Arabidopsis thaliana]
gi|11281995|pir||T48338 arabinogalactan protein-like -
Arabidopsis thaliana gi|7413594|emb|CAB86084.1|
arabinogalactan protein-like [Arabidopsis thaliana]
gi|9757768|dbj|BAB08377.1| contains similarity to
arabinogalactan protein~gene_id:MOK16.8 [Arabidopsis
thaliana] gi|13430542|gb|AAK25893.1|AF360183_1 putative
arabinogalactan protein [Arabidopsis thaliana]
gi|14532750|gb|AAK64076.1| putative arabinogalactan
protein [Arabidopsis thaliana]
Length = 246
Score = 50.8 bits (120), Expect = 9e-06
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -2
Query: 520 ATLTGIVYSDKTLAIYHVDQVLVPLD-FSKPKSPAPAPTLANAPESDKDNSSDEDGDDQG 344
AT+ VYSDK LA+Y VDQVL+PL F +PAPAP + + D+ GD
Sbjct: 158 ATVANSVYSDKQLAVYQVDQVLLPLAMFGSSVAPAPAPEKGGSVSKGSASGGDDGGDSTD 217
Query: 343 AKKA 332
+ A
Sbjct: 218 SSDA 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,692,875
Number of Sequences: 1393205
Number of extensions: 10188312
Number of successful extensions: 58860
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 43843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56036
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
