Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005171A_C01 KMC005171A_c01
(673 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO64344.1| putative beta-tubulin [Vigna radiata] 203 2e-54
sp|Q39445|TBB_CICAR Tubulin beta chain gi|1403143|emb|CAA67056.1... 202 1e-53
dbj|BAA82637.1| Beta-tubulin [Zinnia elegans] 199 4e-53
gb|AAD02498.1| beta tubulin 1 [Arabidopsis thaliana] 200 9e-53
ref|NP_177706.1| tubulin beta-1 chain; protein id: At1g75780.1 [... 200 9e-53
>gb|AAO64344.1| putative beta-tubulin [Vigna radiata]
Length = 153
Score = 203 bits (517), Expect(2) = 2e-54
Identities = 97/102 (95%), Positives = 100/102 (97%)
Frame = -2
Query: 627 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 448
FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSI+EMFRRVSEQFTAMYRRKAFLHWYTG
Sbjct: 46 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIREMFRRVSEQFTAMYRRKAFLHWYTG 105
Query: 447 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEEN 322
EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEED+DE E+
Sbjct: 106 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDFDEEHED 147
Score = 31.2 bits (69), Expect(2) = 2e-54
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -1
Query: 673 VDEQMINVQNKNSS 632
VDEQMINVQNKNSS
Sbjct: 31 VDEQMINVQNKNSS 44
>sp|Q39445|TBB_CICAR Tubulin beta chain gi|1403143|emb|CAA67056.1| beta-tubulin [Cicer
arietinum]
Length = 449
Score = 202 bits (515), Expect(2) = 1e-53
Identities = 96/107 (89%), Positives = 102/107 (94%)
Frame = -2
Query: 627 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 448
FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAM+RRKAFLHWYTG
Sbjct: 343 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 402
Query: 447 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEENAYEEQ 307
EGMDEMEFTEAESNMNDLVAEYQQYQDA A+EE++Y+E E Y+EQ
Sbjct: 403 EGMDEMEFTEAESNMNDLVAEYQQYQDAIAEEEDEYEEEGEEQYDEQ 449
Score = 29.6 bits (65), Expect(2) = 1e-53
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -1
Query: 673 VDEQMINVQNKNSS 632
VDEQ+INVQNKNSS
Sbjct: 328 VDEQIINVQNKNSS 341
>dbj|BAA82637.1| Beta-tubulin [Zinnia elegans]
Length = 448
Score = 199 bits (506), Expect(2) = 4e-53
Identities = 93/107 (86%), Positives = 101/107 (93%)
Frame = -2
Query: 627 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 448
FVEWIPNNVKS+VCDIPP LKM+STFIGNSTSIQEMFRRVSEQFTAM+RRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400
Query: 447 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEENAYEEQ 307
EGMDEMEFTEAESNMNDLV+EYQQYQDATAD+E +Y+E EE YEE+
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEEDEEGVYEEE 447
Score = 31.2 bits (69), Expect(2) = 4e-53
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -1
Query: 673 VDEQMINVQNKNSS 632
VDEQMINVQNKNSS
Sbjct: 326 VDEQMINVQNKNSS 339
>gb|AAD02498.1| beta tubulin 1 [Arabidopsis thaliana]
Length = 448
Score = 200 bits (509), Expect(2) = 9e-53
Identities = 93/105 (88%), Positives = 100/105 (94%)
Frame = -2
Query: 627 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 448
FVEWIPNNVKSSVCDIPP +KM+STF+GNSTSIQEMFRRVSEQFTAM+RRKAFLHWYTG
Sbjct: 343 FVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 402
Query: 447 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEENAYE 313
EGMDEMEFTEAESNMNDLV+EYQQYQDATADEE++YDE EE YE
Sbjct: 403 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEDEYDEEEEQVYE 447
Score = 28.9 bits (63), Expect(2) = 9e-53
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -1
Query: 673 VDEQMINVQNKNSS 632
VDEQ++NVQNKNSS
Sbjct: 328 VDEQILNVQNKNSS 341
>ref|NP_177706.1| tubulin beta-1 chain; protein id: At1g75780.1 [Arabidopsis
thaliana] gi|135442|sp|P12411|TBB1_ARATH Tubulin beta-1
chain gi|71590|pir||UBMUBM tubulin beta-1 chain -
Arabidopsis thaliana gi|166922|gb|AAA32893.1| beta-1
tubulin gi|8778821|gb|AAF26774.2|AC007396_23 T4O12.1
[Arabidopsis thaliana]
gi|9369357|gb|AAF87106.1|AC006434_2 F10A5.3 [Arabidopsis
thaliana]
Length = 447
Score = 200 bits (509), Expect(2) = 9e-53
Identities = 93/105 (88%), Positives = 100/105 (94%)
Frame = -2
Query: 627 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 448
FVEWIPNNVKSSVCDIPP +KM+STF+GNSTSIQEMFRRVSEQFTAM+RRKAFLHWYTG
Sbjct: 342 FVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 401
Query: 447 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEENAYE 313
EGMDEMEFTEAESNMNDLV+EYQQYQDATADEE++YDE EE YE
Sbjct: 402 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEDEYDEEEEQVYE 446
Score = 28.9 bits (63), Expect(2) = 9e-53
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -1
Query: 673 VDEQMINVQNKNSS 632
VDEQ++NVQNKNSS
Sbjct: 327 VDEQILNVQNKNSS 340
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,887,374
Number of Sequences: 1393205
Number of extensions: 13151311
Number of successful extensions: 63341
Number of sequences better than 10.0: 1234
Number of HSP's better than 10.0 without gapping: 50257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59350
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
