Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005165A_C01 KMC005165A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_671935.1| similar to putative carboxyl-terminal peptidase... 58 3e-17
ref|NP_181068.1| hypothetical protein; protein id: At2g35250.1 [... 49 3e-13
ref|NP_180300.1| hypothetical protein; protein id: At2g27320.1 [... 49 1e-11
ref|NP_196122.1| putative protein; protein id: At5g05030.1 [Arab... 46 2e-09
ref|NP_200846.1| putative protein; protein id: At5g60380.1 [Arab... 46 3e-09
>ref|NP_671935.1| similar to putative carboxyl-terminal peptidase; protein id:
At2g38255.1 [Arabidopsis thaliana]
Length = 333
Score = 57.8 bits (138), Expect(2) = 3e-17
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 293 KYQNFIRECPLGKVPILKTRTRQEMVTKSSSKSQLDNLNENSQSKPGHHFATLETTKD-M 469
KY+ + CP G VP+LK + E++ + N+ PG HFAT+ET D
Sbjct: 49 KYKENVLSCPQGTVPVLKQKNGTEII------------HLNTVEYPGQHFATIETVLDGS 96
Query: 470 MFRGGSARISTYNLSLQENQYSIS 541
++RG + IS +N+++Q NQYS S
Sbjct: 97 IYRGAESMISIHNVTVQNNQYSKS 120
Score = 52.0 bits (123), Expect(2) = 3e-17
Identities = 23/36 (63%), Positives = 27/36 (74%)
Frame = +3
Query: 144 SIDDSFDCVDMYNQPAFHHPLLKNHKIQSLPNLSEN 251
SI FDCVD+Y QPAF HPLLKNHKIQ N +++
Sbjct: 8 SILQEFDCVDIYKQPAFQHPLLKNHKIQENFNFNKS 43
>ref|NP_181068.1| hypothetical protein; protein id: At2g35250.1 [Arabidopsis
thaliana] gi|25408364|pir||C84766 hypothetical protein
At2g35250 [imported] - Arabidopsis thaliana
gi|3668081|gb|AAC61813.1| hypothetical protein
[Arabidopsis thaliana]
Length = 342
Score = 48.5 bits (114), Expect(2) = 3e-13
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +3
Query: 153 DSFDCVDMYNQPAFHHPLLKNHKIQ 227
D FDCV++Y QPAF HPLLK+HKIQ
Sbjct: 24 DDFDCVEIYKQPAFQHPLLKDHKIQ 48
Score = 47.4 bits (111), Expect(2) = 3e-13
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 302 NFIRECPLGKVPILKTRTRQEMVTKSSSKSQLDNLNENSQSKPGHHFATLETTKD-MMFR 478
N CP G V IL RQ V+K ++ N+ G HFAT+ET D ++R
Sbjct: 64 NTKEHCPKGTVAIL----RQRNVSKG--------VHLNTAEYSGQHFATIETILDGSIYR 111
Query: 479 GGSARISTYNLSLQENQYSIS 541
G A IS ++L LQ NQYS S
Sbjct: 112 GAEADISIHDLKLQNNQYSKS 132
>ref|NP_180300.1| hypothetical protein; protein id: At2g27320.1 [Arabidopsis
thaliana] gi|25407883|pir||E84671 hypothetical protein
At2g27320 [imported] - Arabidopsis thaliana
gi|5306265|gb|AAD41997.1| hypothetical protein
[Arabidopsis thaliana]
Length = 339
Score = 48.9 bits (115), Expect(2) = 1e-11
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 144 SIDDSFDCVDMYNQPAFHHPLLKNHKIQ 227
SI FDCVD+Y QPAF HPLLK+HKIQ
Sbjct: 25 SILKDFDCVDIYKQPAFQHPLLKHHKIQ 52
Score = 42.0 bits (97), Expect(2) = 1e-11
Identities = 31/94 (32%), Positives = 43/94 (44%), Gaps = 5/94 (5%)
Frame = +2
Query: 269 SSSLGKAVKYQNFIRECPLGKVPILKTRTRQEMVTKSSSKSQLDNLNENSQSKP----GH 436
+ L + +YQ + CP G VPIL+ R E + + + P G
Sbjct: 58 NEKLKRKDEYQPNEKYCPKGTVPILRQRNGTESFHPDTVEYPGQHCCVMKHYTPYFSRGK 117
Query: 437 HFATLETTKD-MMFRGGSARISTYNLSLQENQYS 535
FA LE D ++RG A IS +NL+L NQYS
Sbjct: 118 QFAVLENMLDGSIYRGADALISLHNLTLLNNQYS 151
>ref|NP_196122.1| putative protein; protein id: At5g05030.1 [Arabidopsis thaliana]
gi|10178042|dbj|BAB11525.1| contains similarity to
carboxyl-terminal proteinase~gene_id:MUG13.11
[Arabidopsis thaliana] gi|28393823|gb|AAO42320.1|
unknown protein [Arabidopsis thaliana]
gi|28973367|gb|AAO64008.1| unknown protein [Arabidopsis
thaliana]
Length = 363
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 17/30 (56%), Positives = 24/30 (79%)
Frame = +3
Query: 159 FDCVDMYNQPAFHHPLLKNHKIQSLPNLSE 248
+DCVD+Y QP+ HPLL+NHK+Q P+ S+
Sbjct: 37 YDCVDIYKQPSLSHPLLQNHKVQLEPSFSK 66
Score = 37.0 bits (84), Expect(2) = 2e-09
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +2
Query: 308 IRECPLGKVPILKTRTRQEMVTKSSSKSQLDNLNENSQSKPGHHFATLETTKDMMFRGGS 487
I ECP G VPI++ + + ++ L+ L +S G H A + TT +RG
Sbjct: 80 IIECPNGTVPIIRNTKKYVANAQYWTEKHLNPLTIDSH---GTHIAGVRTTDQGPYRGVI 136
Query: 488 ARISTYNLSLQENQYS 535
A +S ++L++ +Q S
Sbjct: 137 ASLSVHDLNISRDQAS 152
>ref|NP_200846.1| putative protein; protein id: At5g60380.1 [Arabidopsis thaliana]
Length = 373
Score = 46.2 bits (108), Expect(2) = 3e-09
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 129 QNFQPSIDDSFDCVDMYNQPAFHHPLLKNHKIQSLPNLSEN 251
++F+ S + ++DC+D+Y QP H LLKNH IQ P+LS +
Sbjct: 33 RSFKISENVTYDCIDIYKQPGLDHSLLKNHTIQMKPSLSRH 73
Score = 36.2 bits (82), Expect(2) = 3e-09
Identities = 25/76 (32%), Positives = 38/76 (49%)
Frame = +2
Query: 314 ECPLGKVPILKTRTRQEMVTKSSSKSQLDNLNENSQSKPGHHFATLETTKDMMFRGGSAR 493
ECP G +P+L R +E TK+ + N S PG H A ++ + G A+
Sbjct: 90 ECPYGTIPVL--RNTKEFNTKAQLLA-AKYFNPLSADSPGTHIAGVK-QHGGPYHGIEAK 145
Query: 494 ISTYNLSLQENQYSIS 541
+ YNL++ E+Q S S
Sbjct: 146 FNAYNLNIGEDQASYS 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,950,532
Number of Sequences: 1393205
Number of extensions: 9552350
Number of successful extensions: 22924
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 22211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22902
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
