Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005162A_C02 KMC005162A_c02
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_608878.1| CG15624-PA [Drosophila melanogaster] gi|7295652... 33 2.9
gb|AAL11435.1| tyrosine transporter hoepel2 [Drosophila melanoga... 33 2.9
ref|NP_704314.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.8
>ref|NP_608878.1| CG15624-PA [Drosophila melanogaster] gi|7295652|gb|AAF50958.1|
CG15624-PA [Drosophila melanogaster]
Length = 846
Score = 32.7 bits (73), Expect = 2.9
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -2
Query: 332 LSVNLTLIINNYI*MSNCRPADPWDTVLFFFILISLLVVVELCWVFGTIVM*VEHLILNL 153
L V L LII N M + W T+LFF + ++ VE +F I EH+IL++
Sbjct: 664 LGVILLLIILNRDDMEHLMHRIEWTTLLFFAAMFVMMECVERLGIFACISELTEHVILSV 723
>gb|AAL11435.1| tyrosine transporter hoepel2 [Drosophila melanogaster]
Length = 712
Score = 32.7 bits (73), Expect = 2.9
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -2
Query: 332 LSVNLTLIINNYI*MSNCRPADPWDTVLFFFILISLLVVVELCWVFGTIVM*VEHLILNL 153
L V L LII N M + W T+LFF + ++ VE +F I EH+IL++
Sbjct: 530 LGVILLLIILNRDDMEHLMHRIEWTTLLFFAAMFVMMECVERLGIFACISELTEHVILSV 589
>ref|NP_704314.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499053|emb|CAD51133.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 807
Score = 32.3 bits (72), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (49%)
Frame = +3
Query: 171 LHLHHNGAKNPT*FNYHKQRNQNEKKKHSVPRVSGTAVTHLYIIINNKSKIY 326
+H+H N KN + N N ++ ++ + T +Y INNKSKI+
Sbjct: 635 VHIHDNNKKNKNNNTNNNNNNNNNNNNNNNKKILSRSKTKVY--INNKSKIF 684
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,464,319
Number of Sequences: 1393205
Number of extensions: 9422170
Number of successful extensions: 20171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20159
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
