Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005156A_C01 KMC005156A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67993.1| fiddlehead-like protein [Gossypium hirsutum] 177 8e-44
ref|NP_180193.1| beta-ketoacyl-CoA synthase (FIDDLEHEAD); protei... 172 3e-42
gb|AAF73979.1|AF214502_1 fiddlehead protein [Arabidopsis thaliana] 172 3e-42
gb|AAF73980.1|AF214504_1 fiddlehead protein [Arabidopsis thaliana] 171 8e-42
gb|AAF73976.1|AF214496_1 fiddlehead protein [Arabidopsis thaliana] 169 2e-41
>gb|AAL67993.1| fiddlehead-like protein [Gossypium hirsutum]
Length = 535
Score = 177 bits (449), Expect = 8e-44
Identities = 80/96 (83%), Positives = 91/96 (94%)
Frame = -3
Query: 565 SKPILDELQRNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYMEAKERVRRGDRVWQLA 386
SK +LDELQ+NLELSE NMEASRMTLHRFGNTSSSSIWYELAY+EAKERV+RGDR+WQ+A
Sbjct: 438 SKTVLDELQKNLELSENNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRIWQIA 497
Query: 385 FGSGFKCHRVVWLSMKRVNQPSRNNPWLDCINRYPV 278
FGSGFKC+ VVW SM+RV +PSR+NPWLDCI+RYPV
Sbjct: 498 FGSGFKCNSVVWRSMRRVRKPSRDNPWLDCIDRYPV 533
>ref|NP_180193.1| beta-ketoacyl-CoA synthase (FIDDLEHEAD); protein id: At2g26250.1,
supported by cDNA: gi_14517455 [Arabidopsis thaliana]
gi|25407830|pir||B84658 beta-ketoacyl-CoA synthase
(FIDDLEHEAD) [imported] - Arabidopsis thaliana
gi|3075394|gb|AAC14526.1| beta-ketoacyl-CoA synthase
(FIDDLEHEAD) [Arabidopsis thaliana]
gi|3559809|emb|CAA09311.1| fiddlehead protein
[Arabidopsis thaliana]
gi|8177699|gb|AAF73973.1|AF214490_1 fiddlehead protein
[Arabidopsis thaliana]
gi|12597467|gb|AAG60062.1|AF337910_1 putative
beta-ketoacyl-CoA synthase FIDDLEHEAD [Arabidopsis
thaliana] gi|14517456|gb|AAK62618.1| At2g26250/T1D16.11
[Arabidopsis thaliana] gi|23506207|gb|AAN31115.1|
At2g26250/T1D16.11 [Arabidopsis thaliana]
gi|26983882|gb|AAN86193.1| putative beta-ketoacyl-CoA
synthase FIDDLEHEAD [Arabidopsis thaliana]
Length = 550
Score = 172 bits (436), Expect = 3e-42
Identities = 78/98 (79%), Positives = 90/98 (91%)
Frame = -3
Query: 565 SKPILDELQRNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYMEAKERVRRGDRVWQLA 386
SK +L+ELQ+NL LSE+NMEASRMTLHRFGNTSSS IWYELAYMEAKE VRRGDRVWQ+A
Sbjct: 453 SKVVLEELQKNLGLSEENMEASRMTLHRFGNTSSSGIWYELAYMEAKESVRRGDRVWQIA 512
Query: 385 FGSGFKCHRVVWLSMKRVNQPSRNNPWLDCINRYPVSL 272
FGSGFKC+ VVW +M++V +P+RNNPW+DCINRYPV L
Sbjct: 513 FGSGFKCNSVVWKAMRKVKKPTRNNPWVDCINRYPVPL 550
>gb|AAF73979.1|AF214502_1 fiddlehead protein [Arabidopsis thaliana]
Length = 550
Score = 172 bits (436), Expect = 3e-42
Identities = 78/98 (79%), Positives = 90/98 (91%)
Frame = -3
Query: 565 SKPILDELQRNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYMEAKERVRRGDRVWQLA 386
SK +L+ELQ+NL LSE+NMEASRMTLHRFGNTSSS IWYELAYMEAKE VRRGDRVWQ+A
Sbjct: 453 SKVVLEELQKNLGLSEENMEASRMTLHRFGNTSSSGIWYELAYMEAKESVRRGDRVWQIA 512
Query: 385 FGSGFKCHRVVWLSMKRVNQPSRNNPWLDCINRYPVSL 272
FGSGFKC+ VVW +M++V +P+RNNPW+DCINRYPV L
Sbjct: 513 FGSGFKCNSVVWKAMRKVKKPTRNNPWVDCINRYPVPL 550
>gb|AAF73980.1|AF214504_1 fiddlehead protein [Arabidopsis thaliana]
Length = 550
Score = 171 bits (432), Expect = 8e-42
Identities = 77/98 (78%), Positives = 90/98 (91%)
Frame = -3
Query: 565 SKPILDELQRNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYMEAKERVRRGDRVWQLA 386
SK +L+ELQ+NL LSE+NMEASRMTLHRFGNTSSS IWYELAYM+AKE VRRGDRVWQ+A
Sbjct: 453 SKVVLEELQKNLGLSEENMEASRMTLHRFGNTSSSGIWYELAYMKAKESVRRGDRVWQIA 512
Query: 385 FGSGFKCHRVVWLSMKRVNQPSRNNPWLDCINRYPVSL 272
FGSGFKC+ VVW +M++V +P+RNNPW+DCINRYPV L
Sbjct: 513 FGSGFKCNSVVWKAMRKVKKPTRNNPWVDCINRYPVPL 550
>gb|AAF73976.1|AF214496_1 fiddlehead protein [Arabidopsis thaliana]
Length = 550
Score = 169 bits (429), Expect = 2e-41
Identities = 77/98 (78%), Positives = 89/98 (90%)
Frame = -3
Query: 565 SKPILDELQRNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYMEAKERVRRGDRVWQLA 386
SK +L+ELQ+NL LSE+NMEASRMTLHRFGNTSSS IWYELAYMEAKE VRRGDRVWQ+A
Sbjct: 453 SKVVLEELQKNLGLSEENMEASRMTLHRFGNTSSSGIWYELAYMEAKESVRRGDRVWQIA 512
Query: 385 FGSGFKCHRVVWLSMKRVNQPSRNNPWLDCINRYPVSL 272
F SGFKC+ VVW +M++V +P+RNNPW+DCINRYPV L
Sbjct: 513 FDSGFKCNSVVWKAMRKVKKPTRNNPWVDCINRYPVPL 550
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,769,103
Number of Sequences: 1393205
Number of extensions: 9653348
Number of successful extensions: 24273
Number of sequences better than 10.0: 425
Number of HSP's better than 10.0 without gapping: 23265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24117
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
