Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005153A_C01 KMC005153A_c01
(433 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_394251.1| amino acid transport protein related protein [T... 32 2.4
ref|NP_651329.1| CG11819-PA [Drosophila melanogaster] gi|2317224... 32 2.4
ref|NP_111324.1| Amino acid transporter [Thermoplasma volcanium]... 31 3.1
emb|CAD42056.1| hypothetical protein [Escherichia coli] 31 4.0
gb|EAA09242.1| agCP14038 [Anopheles gambiae str. PEST] 30 9.0
>ref|NP_394251.1| amino acid transport protein related protein [Thermoplasma
acidophilum] gi|10640068|emb|CAC11920.1| amino acid
transport protein related protein [Thermoplasma
acidophilum]
Length = 591
Score = 31.6 bits (70), Expect = 2.4
Identities = 17/43 (39%), Positives = 23/43 (52%)
Frame = -1
Query: 301 PS*RRSLVGLINLLELLLMFLGNIPDYFHLIGSNYPLGLYAYL 173
P R VGLI L L +FL P ++ ++G N +YAYL
Sbjct: 351 PRFRTPWVGLIFTLILSSLFLAPFPSWYLIVGINASFTVYAYL 393
>ref|NP_651329.1| CG11819-PA [Drosophila melanogaster] gi|23172246|gb|AAF56388.2|
CG11819-PA [Drosophila melanogaster]
Length = 972
Score = 31.6 bits (70), Expect = 2.4
Identities = 16/60 (26%), Positives = 33/60 (54%), Gaps = 4/60 (6%)
Frame = +1
Query: 121 RKQTYQMLQLYSNRTIPPNKHIALEGSLILLSESS----LECYLKTLKAIQEDLLNQLSF 288
R Q +++++ + + PP + EG+ +L +S+ L YL++ A D LN+++F
Sbjct: 794 RNQIVELIEIVARKMAPPIRRYLAEGAEVLAKDSNSMDQLMMYLESSLATLYDTLNEINF 853
>ref|NP_111324.1| Amino acid transporter [Thermoplasma volcanium]
gi|14325035|dbj|BAB59961.1| amino acid transporter
[Thermoplasma volcanium]
Length = 590
Score = 31.2 bits (69), Expect = 3.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 301 PS*RRSLVGLINLLELLLMFLGNIPDYFHLIGSNYPLGLYAYL 173
P R VGLI L + +FL P ++ ++G N +YAYL
Sbjct: 350 PKFRTPWVGLIFTLIISSLFLAPFPSWYLIVGINASFTVYAYL 392
>emb|CAD42056.1| hypothetical protein [Escherichia coli]
Length = 588
Score = 30.8 bits (68), Expect = 4.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 401 AMARLDHGWTHEDRDEDHGSTT--GPAQSIATST 306
A+ LD GW H DRD+ + S T G A ++T++
Sbjct: 521 AVTALDGGWLHSDRDDPYSSGTLWGAAAGLSTTS 554
>gb|EAA09242.1| agCP14038 [Anopheles gambiae str. PEST]
Length = 743
Score = 29.6 bits (65), Expect = 9.0
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 428 RELKSIFEPAMARLDHGWTHEDRDEDHGSTTGPAQSIATSTRPQLKEKLSWFNKSS 261
+E + + EP+ D GW +D D+D G T + T+T+P +++ N S+
Sbjct: 225 KEGEQVQEPSRTGTDEGW--DDFDDDWGDFTVEGGASNTTTKPDPAKQMKSSNTST 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,816,138
Number of Sequences: 1393205
Number of extensions: 6659569
Number of successful extensions: 16991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16966
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
