Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005152A_C01 KMC005152A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566737.1| expressed protein; protein id: At3g23700.1, sup... 159 2e-38
pir||D86261 hypothetical protein F13K23.5 - Arabidopsis thaliana... 42 0.003
ref|ZP_00074977.1| hypothetical protein [Trichodesmium erythraeu... 42 0.003
ref|NP_172740.1| heat shock factor protein hsf8, putative; prote... 42 0.003
ref|NP_484447.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 41 0.010
>ref|NP_566737.1| expressed protein; protein id: At3g23700.1, supported by cDNA:
gi_15146283 [Arabidopsis thaliana]
gi|9293944|dbj|BAB01847.1| contains similarity to 30s
ribosomal protein s1~gene_id:MYM9.4 [Arabidopsis
thaliana] gi|15146284|gb|AAK83625.1| AT3g23700/MYM9_3
[Arabidopsis thaliana] gi|22655022|gb|AAM98102.1|
At3g23700/MYM9_3 [Arabidopsis thaliana]
Length = 392
Score = 159 bits (402), Expect = 2e-38
Identities = 82/112 (73%), Positives = 93/112 (82%)
Frame = -1
Query: 527 LDKVIPQDGIADSDSMSDSGSSGIEPLPGLESILEELLQEDGIYDARISRQGFEKRVVSQ 348
LDKVI +D S S+S + IEPLPGLE+ILEELL+EDGI +I+RQGFEKRVVSQ
Sbjct: 281 LDKVILKDSSTGSPSLSSNNGDTIEPLPGLETILEELLKEDGIEAVKINRQGFEKRVVSQ 340
Query: 347 DLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKALQRVLERVP 192
DLQLWLSN PP++ +F LLARAGRQVQEIHLTTSL+Q GIKKALQ VLERVP
Sbjct: 341 DLQLWLSNTPPSDGKFVLLARAGRQVQEIHLTTSLEQGGIKKALQHVLERVP 392
>pir||D86261 hypothetical protein F13K23.5 - Arabidopsis thaliana
gi|8698727|gb|AAF78485.1|AC012187_5 Contains similarity
to S1 protein from Homo sapiens gb|U27517 and contains a
S1 RNA binding PF|00575 domain. EST gb|F15427,
gb|F15428 comes from this gene. [Arabidopsis thaliana]
Length = 775
Score = 42.4 bits (98), Expect = 0.003
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = -1
Query: 446 PGLESILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQ 267
P +ES+++EL +GI SR F ++ Q+++ AP ++ LLARAG +VQ
Sbjct: 694 PDVESLIKELEMVEGIQSVSKSRF-FLSPGLAPTFQVYM--APMFENQYKLLARAGNRVQ 750
Query: 266 EIHLTTSLDQEGIKKALQRVLERV 195
E+ + SL +E +K + RV
Sbjct: 751 ELIVEASLSKEEMKSTIMSCTNRV 774
>ref|ZP_00074977.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 99
Score = 42.4 bits (98), Expect = 0.003
Identities = 29/84 (34%), Positives = 43/84 (50%)
Frame = -1
Query: 449 LPGLESILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQV 270
+ GL IL++L Q GI G R S + L + P F L+AR G+ V
Sbjct: 19 IEGLIRILDKLTQHKGIETVT---PGVIGRSKSHIPHIKLKISVPIRGGFKLIARQGKTV 75
Query: 269 QEIHLTTSLDQEGIKKALQRVLER 198
QE+ + TSL QE ++K + +VL +
Sbjct: 76 QEVFILTSLTQEDLEKLITQVLAK 99
>ref|NP_172740.1| heat shock factor protein hsf8, putative; protein id: At1g12800.1,
supported by cDNA: gi_15028376 [Arabidopsis thaliana]
gi|15028377|gb|AAK76665.1| putative heat shock factor
protein hsf8 [Arabidopsis thaliana]
gi|25055005|gb|AAN71967.1| putative heat shock factor
protein hsf8 [Arabidopsis thaliana]
Length = 767
Score = 42.4 bits (98), Expect = 0.003
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = -1
Query: 446 PGLESILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQ 267
P +ES+++EL +GI SR F ++ Q+++ AP ++ LLARAG +VQ
Sbjct: 686 PDVESLIKELEMVEGIQSVSKSRF-FLSPGLAPTFQVYM--APMFENQYKLLARAGNRVQ 742
Query: 266 EIHLTTSLDQEGIKKALQRVLERV 195
E+ + SL +E +K + RV
Sbjct: 743 ELIVEASLSKEEMKSTIMSCTNRV 766
>ref|NP_484447.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25381965|pir||AB1857
hypothetical protein all0403 [imported] - Nostoc sp.
(strain PCC 7120) gi|17129748|dbj|BAB72361.1|
ORF_ID:all0403~hypothetical protein [Nostoc sp. PCC
7120]
Length = 109
Score = 40.8 bits (94), Expect = 0.010
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = -1
Query: 449 LPGLESILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQV 270
+PGL ILE L Q+DGI + G RV ++ L + P + ++AR G+ V
Sbjct: 28 IPGLIPILERLCQQDGI---QTITPGVIGRVKGHSPKMQLRISVPIRGGYKIIARQGKTV 84
Query: 269 QEIHLTTSLDQEGIK 225
QE+ + T L Q+ ++
Sbjct: 85 QEVFILTPLAQDTLE 99
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,831,307
Number of Sequences: 1393205
Number of extensions: 8737927
Number of successful extensions: 21205
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21191
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
