Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005145A_C01 KMC005145A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190348.1| hypothetical protein; protein id: At3g47640.1, ... 100 3e-20
gb|AAL58252.1|AC084762_26 putative amelogenin precursor [Oryza s... 60 3e-08
dbj|BAB01300.1| emb|CAA18500.1~gene_id:MPN9.10~similar to unknow... 44 0.002
ref|NP_188620.1| bHLH protein; protein id: At3g19860.1, supporte... 44 0.002
sp|P78424|RPF1_HUMAN Retina-derived POU-domain factor-1 (RPF-1) ... 43 0.005
>ref|NP_190348.1| hypothetical protein; protein id: At3g47640.1, supported by cDNA:
gi_19423957, supported by cDNA: gi_21280820 [Arabidopsis
thaliana] gi|11357582|pir||T45724 hypothetical protein
F1P2.190 - Arabidopsis thaliana
gi|6522547|emb|CAB61990.1| hypothetical protein
[Arabidopsis thaliana] gi|19423958|gb|AAL87269.1|
unknown protein [Arabidopsis thaliana]
gi|21280821|gb|AAM45066.1| unknown protein [Arabidopsis
thaliana]
Length = 240
Score = 100 bits (248), Expect = 3e-20
Identities = 68/146 (46%), Positives = 86/146 (58%), Gaps = 18/146 (12%)
Frame = -1
Query: 714 ESNYVTMKKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNAPP-------HLELEPPE 556
ES+YVT +KNELKEE LET+I KLQ EI+AR QSKPDLN P H + + PE
Sbjct: 94 ESSYVTTEKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQQHPE 153
Query: 555 Q-TNFPGQSI-QVPTME---PTLPQGPAVLVVPFRPDLQTAFPVPNISELMPKPAPV--- 400
+ + FPG I Q P + TL VLV+P +PD QT +ISE+ P+
Sbjct: 154 RVSQFPGLPIFQGPGFQQSATTLHPPATVLVLPIQPDPQT----QDISEMTQAQQPLMFN 209
Query: 399 ---VSQPHARYPTPADSWPSQLLGEQ 331
VS+P RY + ADSW S+LLGE+
Sbjct: 210 SSNVSKPCPRYASAADSWSSRLLGER 235
>gb|AAL58252.1|AC084762_26 putative amelogenin precursor [Oryza sativa]
Length = 252
Score = 60.1 bits (144), Expect = 3e-08
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Frame = -1
Query: 714 ESNYVTMKKNELKEENCSLETQIEKLQGEIQARVAQSK---PDLNAPPHLELEPPEQTNF 544
ESNYVTM++NEL++EN +L ++I LQ E++ R S P L + P T F
Sbjct: 103 ESNYVTMERNELQDENGALRSEISDLQNELRMRATGSPGWGHGATGSP-LPVPPSPGTVF 161
Query: 543 PGQSIQVPT---------MEPTLPQGPAVLVVPFRPDLQ-----TAFPVPNISELMPKPA 406
P Q P+ ++ LPQ P V+ R L+ A P + + A
Sbjct: 162 PSQQPMQPSPMTTSTVFPLQQPLPQ-PTVIEPSARQPLELKLFLEAPPAEDPEPSEDQEA 220
Query: 405 P-VVSQPHARYPTPADSWPSQL 343
P V++P RYPT A SWP L
Sbjct: 221 PNNVARPQPRYPTEASSWPISL 242
>dbj|BAB01300.1| emb|CAA18500.1~gene_id:MPN9.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 337
Score = 44.3 bits (103), Expect = 0.002
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = -1
Query: 714 ESNYVTMKKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNAPPH-LELEPPEQTNFPG 538
ES +T +KN+L+EE SL++ IE L + Q R+ P A H + + PP +P
Sbjct: 125 ESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVMMAPPPSFPYPM 184
Query: 537 QSIQVPTMEPTLPQGPAVLVVPFRPDLQTAFPVPNISELMPKPAPVVSQPHARYP 373
P P P P+ + P P MP P VV Q P
Sbjct: 185 PIAMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMPYMP-PNTVVEQQSVHIP 238
>ref|NP_188620.1| bHLH protein; protein id: At3g19860.1, supported by cDNA:
gi_17473643, supported by cDNA: gi_20148748 [Arabidopsis
thaliana] gi|17473644|gb|AAL38283.1| unknown protein
[Arabidopsis thaliana] gi|20148749|gb|AAM10265.1|
unknown protein [Arabidopsis thaliana]
Length = 284
Score = 44.3 bits (103), Expect = 0.002
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = -1
Query: 714 ESNYVTMKKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNAPPH-LELEPPEQTNFPG 538
ES +T +KN+L+EE SL++ IE L + Q R+ P A H + + PP +P
Sbjct: 72 ESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVMMAPPPSFPYPM 131
Query: 537 QSIQVPTMEPTLPQGPAVLVVPFRPDLQTAFPVPNISELMPKPAPVVSQPHARYP 373
P P P P+ + P P MP P VV Q P
Sbjct: 132 PIAMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMPYMP-PNTVVEQQSVHIP 185
>sp|P78424|RPF1_HUMAN Retina-derived POU-domain factor-1 (RPF-1)
gi|1890302|gb|AAB49727.1| retina-derived POU-domain
factor-1 [Homo sapiens]
Length = 684
Score = 42.7 bits (99), Expect = 0.005
Identities = 36/119 (30%), Positives = 49/119 (40%), Gaps = 7/119 (5%)
Frame = -1
Query: 663 SLETQIEKLQGEIQARVAQSKPDLNAPPHLELEPPEQTNFPGQSIQVPTMEPTLPQGPAV 484
SL +Q+++LQ ++Q + Q + PP P P QS Q P ++PT PQ P
Sbjct: 166 SLNSQLQQLQLQLQQQQQQQQQQ-QPPPSTNQHPQPAPQAPSQSQQQP-LQPTPPQQP-- 221
Query: 483 LVVPFRPDLQTAFPVPNISELMPKPAPVVSQPHAR-------YPTPADSWPSQLLGEQP 328
P P P S+L P P QPH+ PT S P Q + P
Sbjct: 222 ------PPASQQPPAPT-SQLQQAPQPQQHQPHSHSHNQNQPSPTQQSSSPPQKPSQSP 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,363,278
Number of Sequences: 1393205
Number of extensions: 13778527
Number of successful extensions: 49411
Number of sequences better than 10.0: 384
Number of HSP's better than 10.0 without gapping: 43527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48311
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
