Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005133A_C02 KMC005133A_c02
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD00253.1| homeobox 2 protein [Lycopersicon esculentum] 169 3e-41
ref|NP_564805.1| homeodomain-containing protein HD1, putative; p... 162 4e-39
pir||A96655 hypothetical protein F16P17.16 [imported] - Arabidop... 162 4e-39
gb|AAM67281.1| homeodomain-containing protein HD1, putative [Ara... 162 4e-39
dbj|BAC42940.1| putative homeodomain transcription factor KNAT6 ... 162 4e-39
>gb|AAD00253.1| homeobox 2 protein [Lycopersicon esculentum]
Length = 310
Score = 169 bits (428), Expect = 3e-41
Identities = 78/83 (93%), Positives = 82/83 (97%)
Frame = -1
Query: 616 DVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQIHNWFI 437
DVREEILRKRRAGKLPGDTTTVLKNWWQQH+KWPYPTEDDKAKLVEETGLQLKQI+NWFI
Sbjct: 228 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 287
Query: 436 NPRQRNWHSHSQSVTSLKSKRKR 368
N R+RNWHS+SQSVTSLKSKRKR
Sbjct: 288 NQRKRNWHSNSQSVTSLKSKRKR 310
>ref|NP_564805.1| homeodomain-containing protein HD1, putative; protein id:
At1g62990.1, supported by cDNA: 106887., supported by
cDNA: gi_11878229 [Arabidopsis thaliana]
gi|11878230|gb|AAG40858.1|AF308451_1 homeodomain
transcription factor KNAT7 [Arabidopsis thaliana]
Length = 291
Score = 162 bits (409), Expect = 4e-39
Identities = 73/82 (89%), Positives = 79/82 (96%)
Frame = -1
Query: 616 DVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQIHNWFI 437
DVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQI+NWFI
Sbjct: 209 DVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFI 268
Query: 436 NPRQRNWHSHSQSVTSLKSKRK 371
N R+RNWH++S S+TSLKSKRK
Sbjct: 269 NQRKRNWHNNSHSLTSLKSKRK 290
>pir||A96655 hypothetical protein F16P17.16 [imported] - Arabidopsis thaliana
gi|8493589|gb|AAF75812.1|AC011000_15 Strong similarity
to Homeobox Protein HD1 from Brassica napus gi|1170191,
and contains a lactate/malate dehydrogenase PF|00056
domain. [Arabidopsis thaliana]
Length = 283
Score = 162 bits (409), Expect = 4e-39
Identities = 73/82 (89%), Positives = 79/82 (96%)
Frame = -1
Query: 616 DVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQIHNWFI 437
DVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQI+NWFI
Sbjct: 201 DVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFI 260
Query: 436 NPRQRNWHSHSQSVTSLKSKRK 371
N R+RNWH++S S+TSLKSKRK
Sbjct: 261 NQRKRNWHNNSHSLTSLKSKRK 282
>gb|AAM67281.1| homeodomain-containing protein HD1, putative [Arabidopsis thaliana]
Length = 283
Score = 162 bits (409), Expect = 4e-39
Identities = 73/82 (89%), Positives = 79/82 (96%)
Frame = -1
Query: 616 DVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQIHNWFI 437
DVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQI+NWFI
Sbjct: 201 DVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFI 260
Query: 436 NPRQRNWHSHSQSVTSLKSKRK 371
N R+RNWH++S S+TSLKSKRK
Sbjct: 261 NQRKRNWHNNSHSLTSLKSKRK 282
>dbj|BAC42940.1| putative homeodomain transcription factor KNAT6 [Arabidopsis
thaliana]
Length = 284
Score = 162 bits (409), Expect = 4e-39
Identities = 73/82 (89%), Positives = 79/82 (96%)
Frame = -1
Query: 616 DVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQIHNWFI 437
DVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQI+NWFI
Sbjct: 202 DVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFI 261
Query: 436 NPRQRNWHSHSQSVTSLKSKRK 371
N R+RNWH++S S+TSLKSKRK
Sbjct: 262 NQRKRNWHNNSHSLTSLKSKRK 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,744,309
Number of Sequences: 1393205
Number of extensions: 10577670
Number of successful extensions: 29357
Number of sequences better than 10.0: 593
Number of HSP's better than 10.0 without gapping: 28231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29342
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
