Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005130A_C01 KMC005130A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196721.1| putative protein; protein id: At5g11600.1 [Arab... 140 1e-32
ref|NP_173428.1| hypothetical protein; protein id: At1g19990.1 [... 96 3e-19
pir||C86333 hypothetical protein T20H2.23 - Arabidopsis thaliana... 96 3e-19
gb|AAH46098.1| Similar to RIKEN cDNA 1700023B02 gene [Homo sapiens] 38 0.11
gb|AAD05243.1| CBF1 interacting corepressor CIR [Homo sapiens] 38 0.11
>ref|NP_196721.1| putative protein; protein id: At5g11600.1 [Arabidopsis thaliana]
gi|11357474|pir||T48519 hypothetical protein F15N18.190
- Arabidopsis thaliana gi|7573417|emb|CAB87720.1|
putative protein [Arabidopsis thaliana]
Length = 242
Score = 140 bits (353), Expect = 1e-32
Identities = 75/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)
Frame = -2
Query: 586 PEQKEPLRVFYESLSKQIPTSEMAEFWLMEHGLLSPDKAKKAFEKKQRKQKGLWTGGTPV 407
PE++EPLR+FYESLSKQIP SEMAEFWLMEHG+LSP+KAK+AFEKKQRK K + GTP
Sbjct: 132 PEEREPLRIFYESLSKQIPGSEMAEFWLMEHGMLSPEKAKRAFEKKQRKMKQI-RMGTPS 190
Query: 406 KSSKPSTSTKTKTETLVRKQLPQGSKNG--DIKAKKKIVSESDDDDDDFILSHKRRK 242
KS+ P+ S+K ++ Q SKN D + KKK+V + DDDDDDFILSHKRRK
Sbjct: 191 KSA-PTFSSKAES-----SQRTSASKNNGLDARKKKKVVDDDDDDDDDFILSHKRRK 241
>ref|NP_173428.1| hypothetical protein; protein id: At1g19990.1 [Arabidopsis
thaliana]
Length = 251
Score = 95.9 bits (237), Expect = 3e-19
Identities = 55/126 (43%), Positives = 77/126 (60%), Gaps = 11/126 (8%)
Frame = -2
Query: 586 PEQKEPLRVFYESLSKQIPTSEMAEFWLMEHGLLSPDKAKKAFEKKQRKQKGLWTGGTPV 407
P++++PLR+FYESL KQIPTS+MA+ WLME GLL +KAKK EKK +K L +PV
Sbjct: 125 PDERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAEKAKKVLEKKLQKGGKL---SSPV 181
Query: 406 KSSKPSTSTKTKTETLVRKQ--------LPQGSKNGDIK---AKKKIVSESDDDDDDFIL 260
KS+ + + +K+ T+ +K+ L K D K K+K S+ DD DDDF+
Sbjct: 182 KSAASTPRSNSKSVTVKKKEVQKSPSEALSNKKKGNDSKPTTKKRKKNSDDDDSDDDFLA 241
Query: 259 SHKRRK 242
S +K
Sbjct: 242 SRVSKK 247
>pir||C86333 hypothetical protein T20H2.23 - Arabidopsis thaliana
gi|8778999|gb|AAF79914.1|AC022472_23 Contains a weak
similarity to Rap8 (Rac-3-1) gene from Rhynchosciara
americana gb|U69899. [Arabidopsis thaliana]
Length = 651
Score = 95.9 bits (237), Expect = 3e-19
Identities = 55/126 (43%), Positives = 77/126 (60%), Gaps = 11/126 (8%)
Frame = -2
Query: 586 PEQKEPLRVFYESLSKQIPTSEMAEFWLMEHGLLSPDKAKKAFEKKQRKQKGLWTGGTPV 407
P++++PLR+FYESL KQIPTS+MA+ WLME GLL +KAKK EKK +K L +PV
Sbjct: 525 PDERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAEKAKKVLEKKLQKGGKL---SSPV 581
Query: 406 KSSKPSTSTKTKTETLVRKQ--------LPQGSKNGDIK---AKKKIVSESDDDDDDFIL 260
KS+ + + +K+ T+ +K+ L K D K K+K S+ DD DDDF+
Sbjct: 582 KSAASTPRSNSKSVTVKKKEVQKSPSEALSNKKKGNDSKPTTKKRKKNSDDDDSDDDFLA 641
Query: 259 SHKRRK 242
S +K
Sbjct: 642 SRVSKK 647
>gb|AAH46098.1| Similar to RIKEN cDNA 1700023B02 gene [Homo sapiens]
Length = 450
Score = 37.7 bits (86), Expect = 0.11
Identities = 32/127 (25%), Positives = 57/127 (44%)
Frame = -2
Query: 580 QKEPLRVFYESLSKQIPTSEMAEFWLMEHGLLSPDKAKKAFEKKQRKQKGLWTGGTPVKS 401
+++P F +SL+ + + + +E D+ KK F+K + K K + + S
Sbjct: 205 EEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSS 264
Query: 400 SKPSTSTKTKTETLVRKQLPQGSKNGDIKAKKKIVSESDDDDDDFILSHKRRKW*EKAS* 221
S S+ST+T + + + K K KK S ++ D + K+RK E+ S
Sbjct: 265 SSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSS 324
Query: 220 CLFNREQ 200
NRE+
Sbjct: 325 SHHNREK 331
>gb|AAD05243.1| CBF1 interacting corepressor CIR [Homo sapiens]
Length = 450
Score = 37.7 bits (86), Expect = 0.11
Identities = 32/127 (25%), Positives = 57/127 (44%)
Frame = -2
Query: 580 QKEPLRVFYESLSKQIPTSEMAEFWLMEHGLLSPDKAKKAFEKKQRKQKGLWTGGTPVKS 401
+++P F +SL+ + + + +E D+ KK F+K + K K + + S
Sbjct: 205 EEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSS 264
Query: 400 SKPSTSTKTKTETLVRKQLPQGSKNGDIKAKKKIVSESDDDDDDFILSHKRRKW*EKAS* 221
S S+ST+T + + + K K KK S ++ D + K+RK E+ S
Sbjct: 265 SSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSS 324
Query: 220 CLFNREQ 200
NRE+
Sbjct: 325 THHNREK 331
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,980,222
Number of Sequences: 1393205
Number of extensions: 9432931
Number of successful extensions: 44643
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 37654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42571
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
