Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005126A_C01 KMC005126A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181726.1| hypothetical protein; protein id: At2g41950.1, ... 175 4e-43
gb|AAO37222.1| hypothetical protein [Arabidopsis thaliana] 175 4e-43
gb|AAN60987.1| Unknown protein [Oryza sativa (japonica cultivar-... 121 7e-27
gb|AAO37223.1| hypothetical protein [Arabidopsis thaliana] 103 1e-21
ref|NP_625454.1| putative methyltransferase [Streptomyces coelic... 35 0.47
>ref|NP_181726.1| hypothetical protein; protein id: At2g41950.1, supported by cDNA:
gi_18491232 [Arabidopsis thaliana]
gi|25370815|pir||B84848 hypothetical protein At2g41950
[imported] - Arabidopsis thaliana
gi|2257716|gb|AAB63558.1| hypothetical protein
[Arabidopsis thaliana] gi|18491233|gb|AAL69441.1|
At2g41950/T6D20.26 [Arabidopsis thaliana]
Length = 266
Score = 175 bits (443), Expect = 4e-43
Identities = 81/131 (61%), Positives = 101/131 (76%)
Frame = -3
Query: 552 LLVVHDSLLILACIKEKDDGIKCWQGEITLVPEKWAPFDVVFLYFLPGLPFKLDEILGSL 373
LL+VHDSL LACIKEK D +KCWQGE+ VPEKW+P D VFLYFLP LPF LDE+ +L
Sbjct: 135 LLIVHDSLFTLACIKEKYDKVKCWQGEMIYVPEKWSPLDAVFLYFLPALPFDLDELFKTL 194
Query: 372 ANKCSPGGRVIISHPQGRQALEQQREQYPEVVVSDLPDKTYLQTAAAANSFDVAEFVDEP 193
+ +CS G RV+ISHPQGR LEQQR+++ +VVVSDLPD++ L A +SF++ +FVDE
Sbjct: 195 SQRCSSGARVVISHPQGRLGLEQQRKEFSDVVVSDLPDESTLSNVAEKHSFELTQFVDEQ 254
Query: 192 SFYLAVLICSR 160
YLAVL S+
Sbjct: 255 GLYLAVLKSSK 265
>gb|AAO37222.1| hypothetical protein [Arabidopsis thaliana]
Length = 266
Score = 175 bits (443), Expect = 4e-43
Identities = 81/131 (61%), Positives = 101/131 (76%)
Frame = -3
Query: 552 LLVVHDSLLILACIKEKDDGIKCWQGEITLVPEKWAPFDVVFLYFLPGLPFKLDEILGSL 373
LL+VHDSL LACIKEK D +KCWQGE+ VPEKW+P D VFLYFLP LPF LDE+ +L
Sbjct: 135 LLIVHDSLFTLACIKEKYDKVKCWQGEMIYVPEKWSPLDAVFLYFLPALPFDLDELFKTL 194
Query: 372 ANKCSPGGRVIISHPQGRQALEQQREQYPEVVVSDLPDKTYLQTAAAANSFDVAEFVDEP 193
+ +CS G RV+ISHPQGR LEQQR+++ +VVVSDLPD++ L A +SF++ +FVDE
Sbjct: 195 SQRCSSGARVVISHPQGRLGLEQQRKEFSDVVVSDLPDESTLSNVAEKHSFELTQFVDEQ 254
Query: 192 SFYLAVLICSR 160
YLAVL S+
Sbjct: 255 GLYLAVLKSSK 265
>gb|AAN60987.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 262
Score = 121 bits (303), Expect = 7e-27
Identities = 62/137 (45%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Frame = -3
Query: 552 LLVVHDSLLILACIKEKDDGIKCWQ----------GEITLVPEKWAPFDVVFLYFLPGLP 403
L+ H+SL +LA IKE D ++C+ G + VPE++ FD VF+ + PG+
Sbjct: 123 LVAAHESLYVLAGIKEGHDEVRCFHLEGGGGGRGGGVVEGVPERFDAFDAVFVCYFPGMG 182
Query: 402 FKLDEILGSLANKCSPGGRVIISHPQGRQALEQQREQYPEVVVSDLPDKTYLQTAAAANS 223
+L SLA +CS GGRV+I QGRQ+LEQ R ++PEVV +DLP + L+ A A +
Sbjct: 183 VSAAALLKSLAKRCSKGGRVVIFLDQGRQSLEQHRREHPEVVTADLPTRPSLEKATAGSK 242
Query: 222 FDVAEFVDEPSFYLAVL 172
F++ EFVDEP+ YLAVL
Sbjct: 243 FEILEFVDEPTLYLAVL 259
>gb|AAO37223.1| hypothetical protein [Arabidopsis thaliana]
Length = 204
Score = 103 bits (257), Expect = 1e-21
Identities = 45/67 (67%), Positives = 53/67 (78%)
Frame = -3
Query: 552 LLVVHDSLLILACIKEKDDGIKCWQGEITLVPEKWAPFDVVFLYFLPGLPFKLDEILGSL 373
LL+VHDSL LACIKEK D +KCWQGE+ VPEKW+P D VFLYFLP LPF LDE+ +L
Sbjct: 135 LLIVHDSLFTLACIKEKYDKVKCWQGEMIYVPEKWSPLDAVFLYFLPALPFDLDELFKTL 194
Query: 372 ANKCSPG 352
+ +CS G
Sbjct: 195 SQRCSSG 201
>ref|NP_625454.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
gi|7649527|emb|CAB88946.1| putative methyltransferase
[Streptomyces coelicolor A3(2)]
Length = 199
Score = 35.4 bits (80), Expect = 0.47
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Frame = -3
Query: 474 EITLVPEKWAPFDVVFLYFLPGLPFKLDEILGSL---ANKCSPGGRVIISHPQGRQALEQ 304
++ +P + D VF GL L + G+L A PGG + + HP GR AL
Sbjct: 97 DVAALPLRSRTLDAVFA---AGLVAHLPDPAGNLRELARVVRPGGVLALFHPIGRTALAA 153
Query: 303 QREQYPEVVVSDLPDKTYLQTAAAANSFDVAEFVDEPSFYLAV 175
+ Q + DL + L+ A + + + +VDE +LAV
Sbjct: 154 R--QGRRLTPDDLRAEANLRPLLAGSGWAMTAYVDEDDRFLAV 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,392,048
Number of Sequences: 1393205
Number of extensions: 9513706
Number of successful extensions: 25841
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25826
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
