Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005125A_C01 KMC005125A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C84542 hypothetical protein At2g16630 [imported] - Arabidop... 89 5e-17
ref|NP_179254.2| unknown protein; protein id: At2g16630.1, suppo... 89 5e-17
ref|NP_565474.1| Expressed protein; protein id: At2g20515.1, sup... 39 0.046
gb|AAM64424.1| unknown [Arabidopsis thaliana] 39 0.046
pir||B84590 hypothetical protein At2g20510 [imported] - Arabidop... 37 0.23
>pir||C84542 hypothetical protein At2g16630 [imported] - Arabidopsis thaliana
gi|4581107|gb|AAD24597.1| unknown protein [Arabidopsis
thaliana]
Length = 353
Score = 88.6 bits (218), Expect = 5e-17
Identities = 46/87 (52%), Positives = 62/87 (70%), Gaps = 1/87 (1%)
Frame = -1
Query: 571 RRYGTDITLWKGLQGRGDPYRTLLREGITALLNSYYTLPFSYHPIGVVEHMNEALMG-ST 395
R YGTD+T+ + L GRG+ Y+TLLRE TALLNSY +L F Y+ + V+ + N AL+G S
Sbjct: 270 RIYGTDMTVREALDGRGEAYKTLLREATTALLNSYNSLGFPYNSVAVITYTNLALLGNSE 329
Query: 394 RSVLLTALRFKRSNSGAGNVTCKFTPC 314
VL+TA+RF ++NSG TC+FT C
Sbjct: 330 HDVLMTAIRFIKANSG----TCRFTVC 352
>ref|NP_179254.2| unknown protein; protein id: At2g16630.1, supported by cDNA:
gi_20260415 [Arabidopsis thaliana]
gi|20260416|gb|AAM13106.1| unknown protein [Arabidopsis
thaliana]
Length = 359
Score = 88.6 bits (218), Expect = 5e-17
Identities = 46/87 (52%), Positives = 62/87 (70%), Gaps = 1/87 (1%)
Frame = -1
Query: 571 RRYGTDITLWKGLQGRGDPYRTLLREGITALLNSYYTLPFSYHPIGVVEHMNEALMG-ST 395
R YGTD+T+ + L GRG+ Y+TLLRE TALLNSY +L F Y+ + V+ + N AL+G S
Sbjct: 276 RIYGTDMTVREALDGRGEAYKTLLREATTALLNSYNSLGFPYNSVAVITYTNLALLGNSE 335
Query: 394 RSVLLTALRFKRSNSGAGNVTCKFTPC 314
VL+TA+RF ++NSG TC+FT C
Sbjct: 336 HDVLMTAIRFIKANSG----TCRFTVC 358
>ref|NP_565474.1| Expressed protein; protein id: At2g20515.1, supported by cDNA:
24343. [Arabidopsis thaliana] gi|20198088|gb|AAM15393.1|
Expressed protein [Arabidopsis thaliana]
Length = 155
Score = 38.9 bits (89), Expect = 0.046
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = -1
Query: 568 RYGTDITLWKGL---QGRGDPYRTLLREGITALLNSYYTLPFSYHPIGVVEHMNEALMGS 398
R+ +D+TL + G+ Y LL++GI AL+NSY FSY P V + +A++
Sbjct: 78 RWRSDLTLVESTARNDEEGNAYGALLKQGIAALINSYARKSFSYAPWEVKTMLIQAMVSE 137
Query: 397 TRSVLLTALRFKRSNSGAGNVTC 329
+A R + + NV C
Sbjct: 138 ------SAARRQAEHFAVANVAC 154
>gb|AAM64424.1| unknown [Arabidopsis thaliana]
Length = 152
Score = 38.9 bits (89), Expect = 0.046
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = -1
Query: 568 RYGTDITLWKGL---QGRGDPYRTLLREGITALLNSYYTLPFSYHPIGVVEHMNEALMGS 398
R+ +D+TL + G+ Y LL++GI AL+NSY FSY P V + +A++
Sbjct: 75 RWRSDLTLVESTARNDEEGNAYGALLKQGIAALINSYARKSFSYAPWEVKTMLIQAMVSE 134
Query: 397 TRSVLLTALRFKRSNSGAGNVTC 329
+A R + + NV C
Sbjct: 135 ------SAARRQAEHFAVANVAC 151
>pir||B84590 hypothetical protein At2g20510 [imported] - Arabidopsis thaliana
Length = 533
Score = 36.6 bits (83), Expect = 0.23
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -1
Query: 568 RYGTDITLWKGL---QGRGDPYRTLLREGITALLNSYYTLPFSYHPIGVVEHMNEALMGS 398
R+ +D+TL + G+ Y LL++GI AL+NSY FSY P V + +A++
Sbjct: 20 RWRSDLTLVESTARNDEEGNAYGALLKQGIAALINSYARKSFSYAPWEVKTMLIQAMVSE 79
Query: 397 T 395
+
Sbjct: 80 S 80
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,447,145
Number of Sequences: 1393205
Number of extensions: 10259631
Number of successful extensions: 21894
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21888
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
