Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005123A_C01 KMC005123A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01736 ribosomal protein L3 precursor, chloroplast - common... 238 6e-70
gb|AAM62519.1| 50S ribosomal protein L3 [Arabidopsis thaliana] 236 1e-69
ref|NP_181831.1| 50S ribosomal protein L3; protein id: At2g43030... 236 1e-69
ref|NP_680872.1| 50S ribosomal protein L3 [Thermosynechococcus e... 166 1e-43
sp|O24689|RL3_SYNP6 50S ribosomal protein L3 gi|2446890|dbj|BAA2... 161 6e-42
>pir||T01736 ribosomal protein L3 precursor, chloroplast - common tobacco
(fragment) gi|3298437|dbj|BAA31509.1| chloroplast
ribosomal protein L3 [Nicotiana tabacum]
Length = 259
Score = 238 bits (608), Expect(2) = 6e-70
Identities = 115/135 (85%), Positives = 125/135 (92%)
Frame = -1
Query: 679 LTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIGKGF 500
LTKPE+GHLEK G IP+RHLQEFRLQS++GF++ Q+L F ELFKEGDLVDVSGTTIGKGF
Sbjct: 103 LTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGF 162
Query: 499 QGGIKRWNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKRKIRKLKIVK 320
QGGIKR NFKRG M+HGSKSHRQLGSIGAGTTPGRVY GKKMPGRMGGTKRKIRKLKIVK
Sbjct: 163 QGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 222
Query: 319 IDKDLNVVMIKGALP 275
ID LN++MIKGALP
Sbjct: 223 IDDQLNIIMIKGALP 237
Score = 48.1 bits (113), Expect(2) = 6e-70
Identities = 22/27 (81%), Positives = 23/27 (84%)
Frame = -2
Query: 288 KVLFPGKPGNLLRITPAKIVGKNIPKN 208
K PGKPGNLLRI PAKIVGKNIPK+
Sbjct: 233 KGALPGKPGNLLRIAPAKIVGKNIPKS 259
>gb|AAM62519.1| 50S ribosomal protein L3 [Arabidopsis thaliana]
Length = 271
Score = 236 bits (602), Expect(2) = 1e-69
Identities = 113/135 (83%), Positives = 125/135 (91%)
Frame = -1
Query: 679 LTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIGKGF 500
LTKPE GHL+K G IPMRHLQEFRL ++EGF+ NQ+LVFDE+FKEGDLVDV+GTTIGKGF
Sbjct: 115 LTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGF 174
Query: 499 QGGIKRWNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKRKIRKLKIVK 320
QGGIKR +FKRG M+HGSKSHR LGSIGAGTTPGRVY GKKMPGRMGGT+ KIRKLKIVK
Sbjct: 175 QGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVK 234
Query: 319 IDKDLNVVMIKGALP 275
+DK+LNVVMIKGALP
Sbjct: 235 VDKELNVVMIKGALP 249
Score = 49.3 bits (116), Expect(2) = 1e-69
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -2
Query: 288 KVLFPGKPGNLLRITPAKIVGKNIPKN 208
K PGKPGNLLRITPAKIVG NIPKN
Sbjct: 245 KGALPGKPGNLLRITPAKIVGVNIPKN 271
>ref|NP_181831.1| 50S ribosomal protein L3; protein id: At2g43030.1, supported by
cDNA: 142861. [Arabidopsis thaliana]
gi|25294944|pir||B84861 50S ribosomal protein L3
[imported] - Arabidopsis thaliana
gi|4531443|gb|AAD22128.1| 50S ribosomal protein L3
[Arabidopsis thaliana]
Length = 271
Score = 236 bits (602), Expect(2) = 1e-69
Identities = 113/135 (83%), Positives = 125/135 (91%)
Frame = -1
Query: 679 LTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIGKGF 500
LTKPE GHL+K G IPMRHLQEFRL ++EGF+ NQ+LVFDE+FKEGDLVDV+GTTIGKGF
Sbjct: 115 LTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGF 174
Query: 499 QGGIKRWNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKRKIRKLKIVK 320
QGGIKR +FKRG M+HGSKSHR LGSIGAGTTPGRVY GKKMPGRMGGT+ KIRKLKIVK
Sbjct: 175 QGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVK 234
Query: 319 IDKDLNVVMIKGALP 275
+DK+LNVVMIKGALP
Sbjct: 235 VDKELNVVMIKGALP 249
Score = 49.3 bits (116), Expect(2) = 1e-69
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -2
Query: 288 KVLFPGKPGNLLRITPAKIVGKNIPKN 208
K PGKPGNLLRITPAKIVG NIPKN
Sbjct: 245 KGALPGKPGNLLRITPAKIVGVNIPKN 271
>ref|NP_680872.1| 50S ribosomal protein L3 [Thermosynechococcus elongatus BP-1]
gi|22293802|dbj|BAC07634.1| 50S ribosomal protein L3
[Thermosynechococcus elongatus BP-1]
Length = 212
Score = 166 bits (419), Expect(2) = 1e-43
Identities = 79/135 (58%), Positives = 102/135 (75%)
Frame = -1
Query: 679 LTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIGKGF 500
L++PE GHL K PMRHL+EFRL+ + + L Q + D +F G LVDV GT+IG+GF
Sbjct: 61 LSRPERGHLNKSQTPPMRHLREFRLEDVSAYQLGQAITVD-IFSPGQLVDVRGTSIGRGF 119
Query: 499 QGGIKRWNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKRKIRKLKIVK 320
G KR NFKRGPM+HGSK+HR GS GAGTTPGRV+PGK+M GRMG T IRKL++++
Sbjct: 120 AGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVFPGKRMAGRMGNTAVTIRKLQVMR 179
Query: 319 IDKDLNVVMIKGALP 275
+D + N+++IKGALP
Sbjct: 180 VDPERNLILIKGALP 194
Score = 33.1 bits (74), Expect(2) = 1e-43
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = -2
Query: 288 KVLFPGKPGNLLRITPAKIVGK 223
K PGKPG L+ ITPAK+VG+
Sbjct: 190 KGALPGKPGALVSITPAKVVGR 211
>sp|O24689|RL3_SYNP6 50S ribosomal protein L3 gi|2446890|dbj|BAA22449.1| 50S ribosomal
protein L3 [Synechococcus sp.]
Length = 213
Score = 161 bits (408), Expect(2) = 6e-42
Identities = 79/135 (58%), Positives = 98/135 (72%)
Frame = -1
Query: 679 LTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIGKGF 500
L+KPELGHL K GA P+RHL E+R+ S +G +L Q L D F+ G VDV G TIG+GF
Sbjct: 61 LSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADR-FEAGQKVDVQGHTIGRGF 119
Query: 499 QGGIKRWNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKRKIRKLKIVK 320
G KR F RGPMSHGSK+HR GS GAGTTPGRVYPGK+M GR G K IR L +V+
Sbjct: 120 TGYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVR 179
Query: 319 IDKDLNVVMIKGALP 275
+D D N++++KG++P
Sbjct: 180 VDADRNLLLVKGSVP 194
Score = 31.6 bits (70), Expect(2) = 6e-42
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 276 PGKPGNLLRITPAKIVGK 223
PGKPG LL ITPA +VG+
Sbjct: 194 PGKPGALLNITPATVVGQ 211
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,100,063
Number of Sequences: 1393205
Number of extensions: 14125831
Number of successful extensions: 42583
Number of sequences better than 10.0: 274
Number of HSP's better than 10.0 without gapping: 40286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42293
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
