Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005115A_C02 KMC005115A_c02
(1031 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 pr... 491 e-137
sp|P27524|CB4A_LYCES Chlorophyll A-B binding protein CP24 10A, c... 467 e-130
ref|NP_173034.1| chlorophyll binding protein, putative; protein ... 456 e-127
pir||T52314 chlorophyll a/b-binding protein Lhcb6 [imported] - A... 456 e-127
sp|P27525|CB4B_LYCES Chlorophyll A-B binding protein CP24 10B, c... 454 e-126
>gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 491 bits (1263), Expect = e-137
Identities = 238/258 (92%), Positives = 246/258 (95%)
Frame = -3
Query: 951 AAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPA 772
AAATSGAVLNGLGSSFL GG+RSQTLLA++ G K G AVSP+RLIV AAAA PKKSWIP
Sbjct: 2 AAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAA-PKKSWIPG 60
Query: 771 VKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 592
V+GGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ
Sbjct: 61 VRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 591 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSK 412
AWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSK
Sbjct: 121 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 411 TAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAML 232
TAENFAN TG+QGYPGGKFFDPL AGTL+DGVYIPD EKLERLKLAEIKHAR+AMLAML
Sbjct: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240
Query: 231 IFYFEAGQGKTPLGALGL 178
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>sp|P27524|CB4A_LYCES Chlorophyll A-B binding protein CP24 10A, chloroplast precursor
(CAB-10A) (LHCP) gi|100195|pir||S11877 chlorophyll
a/b-binding protein Cab10A - tomato
gi|170394|gb|AAA34143.1| a-binding protein
Length = 256
Score = 467 bits (1202), Expect = e-130
Identities = 224/257 (87%), Positives = 238/257 (92%)
Frame = -3
Query: 948 AATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPAV 769
A TS AVLNGL SSFL GGN+SQ LLA+ A+ G A +PKR V AAAA KKSWIPAV
Sbjct: 2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAA--KKSWIPAV 59
Query: 768 KGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 589
+GGGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA
Sbjct: 60 RGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 119
Query: 588 WSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKT 409
WSG+PWFEAGADP AIAPFSFG+LLGTQLILMGWVESKRWVDFF+PDSQSVEWATPWSKT
Sbjct: 120 WSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKT 179
Query: 408 AENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAMLI 229
AENFAN+TG+QGYPGGKFFDPLALAGTL +GVY+PD EKLERLK+AEIKHARLAMLAMLI
Sbjct: 180 AENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLI 239
Query: 228 FYFEAGQGKTPLGALGL 178
FYFEAGQGKTPLGALGL
Sbjct: 240 FYFEAGQGKTPLGALGL 256
>ref|NP_173034.1| chlorophyll binding protein, putative; protein id: At1g15820.1,
supported by cDNA: gi_12083257, supported by cDNA:
gi_17473664, supported by cDNA: gi_20148630, supported
by cDNA: gi_4741959 [Arabidopsis thaliana]
gi|25299031|pir||F86292 probable chlorophyll A-B binding
protein F7H2.16 - Arabidopsis thaliana
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6
protein from Arabidopsis thaliana gb|AF134130 and is a
member of the Chlorophyll A-B binding proteins PF|00504.
ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene
gi|12083258|gb|AAG48788.1|AF332425_1 putative
chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis
thaliana] gi|20148631|gb|AAM10206.1| chlorophyll A-B
binding protein [Arabidopsis thaliana]
Length = 258
Score = 456 bits (1174), Expect = e-127
Identities = 224/258 (86%), Positives = 232/258 (89%)
Frame = -3
Query: 951 AAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPA 772
A A SGAVL+GLGSSFL GG R T LAS G A V K LIVAAAAA PKKSWIPA
Sbjct: 2 AMAVSGAVLSGLGSSFLTGGKRGATALASGVGTGA-QRVGRKTLIVAAAAAQPKKSWIPA 60
Query: 771 VKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 592
VKGGGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ
Sbjct: 61 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 591 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSK 412
AWSGV WFEAGA P+AIAPFSFGSLLGTQL+LMGWVESKRWVDFFNPDSQSVEWATPWSK
Sbjct: 121 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 411 TAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAML 232
TAENFANYTGDQGYPGG+FFDPL LAG +DGVY PD EKLERLKLAEIKH+RLAM+AML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Query: 231 IFYFEAGQGKTPLGALGL 178
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>pir||T52314 chlorophyll a/b-binding protein Lhcb6 [imported] - Arabidopsis
thaliana gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6
protein [Arabidopsis thaliana]
Length = 258
Score = 456 bits (1172), Expect = e-127
Identities = 223/258 (86%), Positives = 232/258 (89%)
Frame = -3
Query: 951 AAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPA 772
A A SGAVL+G+GSSFL GG R T LAS G A V K LIVAAAAA PKKSWIPA
Sbjct: 2 AMAVSGAVLSGIGSSFLTGGKRGATALASGVGTGA-QRVGRKTLIVAAAAAQPKKSWIPA 60
Query: 771 VKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 592
VKGGGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ
Sbjct: 61 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 591 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSK 412
AWSGV WFEAGA P+AIAPFSFGSLLGTQL+LMGWVESKRWVDFFNPDSQSVEWATPWSK
Sbjct: 121 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 411 TAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAML 232
TAENFANYTGDQGYPGG+FFDPL LAG +DGVY PD EKLERLKLAEIKH+RLAM+AML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Query: 231 IFYFEAGQGKTPLGALGL 178
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>sp|P27525|CB4B_LYCES Chlorophyll A-B binding protein CP24 10B, chloroplast precursor
(CAB-10B) (LHCP) gi|100202|pir||S11878 chlorophyll
a/b-binding protein Cab10B - tomato
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein
Length = 256
Score = 454 bits (1167), Expect = e-126
Identities = 216/252 (85%), Positives = 232/252 (91%)
Frame = -3
Query: 933 AVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPAVKGGGN 754
AVLNGL SSFL GG ++Q LL + A+ +PKR +VAAAA APKKSWIPAVK GGN
Sbjct: 8 AVLNGLSSSFLTGGKKTQALLGAHVTARV---TTPKRFVVAAAAVAPKKSWIPAVKSGGN 64
Query: 753 LVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVP 574
LVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG+P
Sbjct: 65 LVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIP 124
Query: 573 WFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFA 394
WFEAGADP AIAPFSFGSLLGTQL+LMGWVESKRWVDFF+ DSQS++WATPWSKTAENFA
Sbjct: 125 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFA 184
Query: 393 NYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAMLIFYFEA 214
N+TG+QGYPGGKFFDPLALAGTL +GVY+PD EKLERLKLAEIKH+RLAMLAMLIFYFEA
Sbjct: 185 NFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244
Query: 213 GQGKTPLGALGL 178
GQGKTPLGALGL
Sbjct: 245 GQGKTPLGALGL 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 979,380,546
Number of Sequences: 1393205
Number of extensions: 24587180
Number of successful extensions: 97250
Number of sequences better than 10.0: 553
Number of HSP's better than 10.0 without gapping: 79980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93055
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 60429070113
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
