Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005098A_C01 KMC005098A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB92229.1| fimbrin-like protein (actin binding motif) [Oryz... 119 2e-26
ref|NP_199657.1| fimbrin 2 (gb|AAB97844.1); protein id: At5g4846... 117 1e-25
gb|AAC49919.1| fimbrin-like protein AtFim2 [Arabidopsis thaliana] 117 1e-25
ref|NP_194400.1| fimbrin-like protein (ATFIM1); protein id: At4g... 98 5e-20
gb|AAC39359.1| fimbrin-like protein [Arabidopsis thaliana] 98 5e-20
>dbj|BAB92229.1| fimbrin-like protein (actin binding motif) [Oryza sativa (japonica
cultivar-group)]
Length = 585
Score = 119 bits (298), Expect = 2e-26
Identities = 62/93 (66%), Positives = 75/93 (79%)
Frame = -2
Query: 510 GVTDQEQTMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPHEERT 331
G D+E+ MNA+YIIS+ARKLGCSIFLLPEDI EVNQKM+LTLTASIMYW LK P T
Sbjct: 495 GEKDEEKQMNASYIISVARKLGCSIFLLPEDILEVNQKMMLTLTASIMYWHLKKP----T 550
Query: 330 IGTSDSESGNQLETTSNSTLDDSASDSSVDENG 232
+ D+E+G+ ET+S ST DDSAS+SS D++G
Sbjct: 551 SFSLDTENGSSCETSSISTSDDSASESSFDDSG 583
>ref|NP_199657.1| fimbrin 2 (gb|AAB97844.1); protein id: At5g48460.1, supported by
cDNA: gi_2811225 [Arabidopsis thaliana]
gi|2811226|gb|AAB97844.1| fimbrin 2 [Arabidopsis
thaliana] gi|2811232|gb|AAB97847.1| fimbrin 2
[Arabidopsis thaliana] gi|8777376|dbj|BAA96966.1|
fimbrin 2 [Arabidopsis thaliana]
Length = 654
Score = 117 bits (292), Expect = 1e-25
Identities = 62/91 (68%), Positives = 71/91 (77%), Gaps = 1/91 (1%)
Frame = -2
Query: 510 GVTDQEQTMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHP-HEER 334
GVTD+E+ MNATY+ISIARKLGCSIFLLPEDI EVNQKM+LTLTASIMYW LK P H +
Sbjct: 572 GVTDEEKKMNATYVISIARKLGCSIFLLPEDIIEVNQKMMLTLTASIMYWTLKQPLHLNK 631
Query: 333 TIGTSDSESGNQLETTSNSTLDDSASDSSVD 241
IG+ DS +G S LDDS SDSS++
Sbjct: 632 PIGSPDSHNG--------SLLDDSTSDSSIE 654
>gb|AAC49919.1| fimbrin-like protein AtFim2 [Arabidopsis thaliana]
Length = 456
Score = 117 bits (292), Expect = 1e-25
Identities = 62/91 (68%), Positives = 71/91 (77%), Gaps = 1/91 (1%)
Frame = -2
Query: 510 GVTDQEQTMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHP-HEER 334
GVTD+E+ MNATY+ISIARKLGCSIFLLPEDI EVNQKM+LTLTASIMYW LK P H +
Sbjct: 374 GVTDEEKKMNATYVISIARKLGCSIFLLPEDIIEVNQKMMLTLTASIMYWTLKQPLHLNK 433
Query: 333 TIGTSDSESGNQLETTSNSTLDDSASDSSVD 241
IG+ DS +G S LDDS SDSS++
Sbjct: 434 PIGSPDSHNG--------SLLDDSTSDSSIE 456
>ref|NP_194400.1| fimbrin-like protein (ATFIM1); protein id: At4g26700.1, supported
by cDNA: gi_2905892 [Arabidopsis thaliana]
gi|7441365|pir||T04793 probable fimbrin ATFIM1 -
Arabidopsis thaliana gi|4455193|emb|CAB36516.1|
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
gi|7269522|emb|CAB79525.1| fimbrin-like protein (ATFIM1)
[Arabidopsis thaliana]
Length = 687
Score = 98.2 bits (243), Expect = 5e-20
Identities = 52/91 (57%), Positives = 61/91 (66%)
Frame = -2
Query: 510 GVTDQEQTMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPHEERT 331
G TD E+ +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIMYW L+ E
Sbjct: 570 GETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQRHSRE-- 627
Query: 330 IGTSDSESGNQLETTSNSTLDDSASDSSVDE 238
+SDS S TT ST A + +E
Sbjct: 628 --SSDSSSTQSTTTTCTSTASSPAPSVTEEE 656
>gb|AAC39359.1| fimbrin-like protein [Arabidopsis thaliana]
Length = 687
Score = 98.2 bits (243), Expect = 5e-20
Identities = 52/91 (57%), Positives = 61/91 (66%)
Frame = -2
Query: 510 GVTDQEQTMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPHEERT 331
G TD E+ +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIMYW L+ E
Sbjct: 570 GETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQRHSRE-- 627
Query: 330 IGTSDSESGNQLETTSNSTLDDSASDSSVDE 238
+SDS S TT ST A + +E
Sbjct: 628 --SSDSSSTQSTTTTCTSTASSPAPSVTEEE 656
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,935,280
Number of Sequences: 1393205
Number of extensions: 7416966
Number of successful extensions: 17334
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 16476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17304
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
