Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005097A_C01 KMC005097A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB84837.1| putative amino acid or GABA permease [Oryza sati... 122 2e-27
gb|AAL86294.1| putative amino acid or GABA permease [Arabidopsis... 120 1e-26
pir||D84421 probable amino acid permease [imported] - Arabidopsi... 120 2e-26
ref|NP_565254.1| amino acid permease family; protein id: At2g011... 120 2e-26
dbj|BAB63860.1| contains EST AU031682(R0503)~similar to GABA per... 91 1e-17
>dbj|BAB84837.1| putative amino acid or GABA permease [Oryza sativa (japonica
cultivar-group)] gi|20804797|dbj|BAB92481.1| putative
amino acid or GABA permease [Oryza sativa (japonica
cultivar-group)]
Length = 766
Score = 122 bits (307), Expect = 2e-27
Identities = 76/178 (42%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Frame = -2
Query: 570 NSRCYIFLLGLLMSQYTLTGYDASAHMVSIFFFNLGILFLISIEGLKFLNGLD*DVLLKA 391
+S YIF+LGLLMSQYTLTGYDASAHM
Sbjct: 239 HSNFYIFVLGLLMSQYTLTGYDASAHM--------------------------------- 265
Query: 390 SFYMQTEETKDAERNGPKGIISSIGLSIIVGWCYILGISFAVTDMPWPFK****GWWVCN 211
TEETK+A+RNGP GIIS+IG+SIIVGW YILGI+FAV D+P ++ N
Sbjct: 266 -----TEETKNADRNGPIGIISAIGISIIVGWGYILGITFAVKDIP----------YLLN 310
Query: 210 --------CL*DILSGIARVDMAMDVGGIVCLGIVAVAVFFCGMSSVMKRPVLLYIYS 61
+ ++ + +GGI+CLGIVAVA++FCGMSSV + Y +S
Sbjct: 311 PENDAGGYAIAEVFYLAFKSRYGSGIGGIICLGIVAVAIYFCGMSSVTSNSRMAYAFS 368
Score = 33.9 bits (76), Expect = 1.5
Identities = 22/49 (44%), Positives = 32/49 (64%)
Frame = -3
Query: 332 LLVLLGYLLLLDGVTY*AFPLQLLICPGLLSDDNEAGGYAIACEIFYLA 186
++V GY+L G+T+ + P LL+ +N+AGGYAIA E+FYLA
Sbjct: 288 IIVGWGYIL---GITFAVKDI-----PYLLNPENDAGGYAIA-EVFYLA 327
>gb|AAL86294.1| putative amino acid or GABA permease [Arabidopsis thaliana]
Length = 516
Score = 120 bits (301), Expect = 1e-26
Identities = 77/174 (44%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Frame = -2
Query: 567 SRCYIFLLGLLMSQYTLTGYDASAHMVSIFFFNLGILFLISIEGLKFLNGLD*DVLLKAS 388
S YIF+LGLLMSQYT+TGYDASAHM
Sbjct: 236 SYAYIFVLGLLMSQYTITGYDASAHM---------------------------------- 261
Query: 387 FYMQTEETKDAERNGPKGIISSIGLSIIVGWCYILGISFAVTDMPWPFK****GWWVCN- 211
TEET DA++NGP+GIIS+IG+SI+ GW YILGIS+AVTD+P N
Sbjct: 262 ----TEETVDADKNGPRGIISAIGISILFGWGYILGISYAVTDIPSLLS-------ETNN 310
Query: 210 ----CL*DILSGIARVDMAMDVGGIVCLGIVAVAVFFCGMSSVMKRPVLLYIYS 61
+ +I + GGIVCLGIVAVAVFFCGMSSV + Y +S
Sbjct: 311 SGGYAIAEIFYLAFKNRFGSGTGGIVCLGIVAVAVFFCGMSSVTSNSRMAYAFS 364
Score = 34.3 bits (77), Expect = 1.1
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -3
Query: 317 GYLLLLDGVTY*AFPLQLLICPGLLSDDNEAGGYAIACEIFYLA 186
GY+L G++Y + P LLS+ N +GGYAIA EIFYLA
Sbjct: 289 GYIL---GISYAVTDI-----PSLLSETNNSGGYAIA-EIFYLA 323
>pir||D84421 probable amino acid permease [imported] - Arabidopsis thaliana
Length = 517
Score = 120 bits (300), Expect = 2e-26
Identities = 76/174 (43%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Frame = -2
Query: 567 SRCYIFLLGLLMSQYTLTGYDASAHMVSIFFFNLGILFLISIEGLKFLNGLD*DVLLKAS 388
S YIF+LGLLMSQYT+TGYDASAHM
Sbjct: 237 SYAYIFVLGLLMSQYTITGYDASAHM---------------------------------- 262
Query: 387 FYMQTEETKDAERNGPKGIISSIGLSIIVGWCYILGISFAVTDMPWPFK****GWWVCN- 211
TEET DA++NGP+GIIS+IG+SI+ GW YILGIS+AVTD+P N
Sbjct: 263 ----TEETVDADKNGPRGIISAIGISILFGWGYILGISYAVTDIPSLLS-------ETNN 311
Query: 210 ----CL*DILSGIARVDMAMDVGGIVCLGIVAVAVFFCGMSSVMKRPVLLYIYS 61
+ +I + GGIVCLG+VAVAVFFCGMSSV + Y +S
Sbjct: 312 SGGYAIAEIFYLAFKNRFGSGTGGIVCLGVVAVAVFFCGMSSVTSNSRMAYAFS 365
Score = 34.3 bits (77), Expect = 1.1
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -3
Query: 317 GYLLLLDGVTY*AFPLQLLICPGLLSDDNEAGGYAIACEIFYLA 186
GY+L G++Y + P LLS+ N +GGYAIA EIFYLA
Sbjct: 290 GYIL---GISYAVTDI-----PSLLSETNNSGGYAIA-EIFYLA 324
>ref|NP_565254.1| amino acid permease family; protein id: At2g01170.1, supported by
cDNA: gi_19347736, supported by cDNA: gi_2444270
[Arabidopsis thaliana] gi|2444271|gb|AAB71542.1|
putative amino acid or GABA permease [Arabidopsis
thaliana] gi|20197592|gb|AAD14517.2| putative amino acid
or GABA permease [Arabidopsis thaliana]
Length = 516
Score = 120 bits (300), Expect = 2e-26
Identities = 76/174 (43%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Frame = -2
Query: 567 SRCYIFLLGLLMSQYTLTGYDASAHMVSIFFFNLGILFLISIEGLKFLNGLD*DVLLKAS 388
S YIF+LGLLMSQYT+TGYDASAHM
Sbjct: 236 SYAYIFVLGLLMSQYTITGYDASAHM---------------------------------- 261
Query: 387 FYMQTEETKDAERNGPKGIISSIGLSIIVGWCYILGISFAVTDMPWPFK****GWWVCN- 211
TEET DA++NGP+GIIS+IG+SI+ GW YILGIS+AVTD+P N
Sbjct: 262 ----TEETVDADKNGPRGIISAIGISILFGWGYILGISYAVTDIPSLLS-------ETNN 310
Query: 210 ----CL*DILSGIARVDMAMDVGGIVCLGIVAVAVFFCGMSSVMKRPVLLYIYS 61
+ +I + GGIVCLG+VAVAVFFCGMSSV + Y +S
Sbjct: 311 SGGYAIAEIFYLAFKNRFGSGTGGIVCLGVVAVAVFFCGMSSVTSNSRMAYAFS 364
Score = 34.3 bits (77), Expect = 1.1
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -3
Query: 317 GYLLLLDGVTY*AFPLQLLICPGLLSDDNEAGGYAIACEIFYLA 186
GY+L G++Y + P LLS+ N +GGYAIA EIFYLA
Sbjct: 289 GYIL---GISYAVTDI-----PSLLSETNNSGGYAIA-EIFYLA 323
>dbj|BAB63860.1| contains EST AU031682(R0503)~similar to GABA permease~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|19386878|dbj|BAB86255.1| P0614D08.23 [Oryza sativa
(japonica cultivar-group)]
Length = 637
Score = 90.5 bits (223), Expect = 1e-17
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Frame = -2
Query: 564 RCYIFLLGLLMSQYTLTGYDASAHMVSIFFFNLGILFLISIEGLKFLNGLD*DVLLKASF 385
+ YI L+GLLMSQY + GYD SAHM
Sbjct: 355 KAYILLIGLLMSQYAMAGYDTSAHM----------------------------------- 379
Query: 384 YMQTEETKDAERNGPKGIISSIGLSIIVGWCYILGISFAVTDMPWPFK****GWWVCNCL 205
TEETK+A+ +GP GI++S+ LS + GW YI+ ++ AVTD+P+
Sbjct: 380 ---TEETKNADWSGPIGIVTSVALSTVFGWIYIVSLTSAVTDIPYLLS------------ 424
Query: 204 *DILSGIARVDMAM----------DVGGIVCLGIVAVAVFFCGMSSVMKRPVLLYIYS 61
D +G V A +GGI+CLG+VAVAVF CG++ + + Y +S
Sbjct: 425 PDNDAGGNAVAQAFYTTFHRRYGSGLGGILCLGVVAVAVFLCGLACITSNSRMAYAFS 482
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,704,003
Number of Sequences: 1393205
Number of extensions: 10323461
Number of successful extensions: 30396
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 27190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30019
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
