Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005089A_C02 KMC005089A_c02
(981 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloropla... 460 e-128
sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chlorop... 419 e-116
sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chlorop... 417 e-115
sp|P29795|PSBP_LYCES Oxygen-evolving enhancer protein 2, chlorop... 414 e-114
sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chlorop... 413 e-114
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane
protein) gi|280396|pir||JS0771 photosystem II
oxygen-evolving complex protein 2 precursor - garden pea
gi|20617|emb|CAA33557.1| precursor polypeptide (AA -73
to 186) [Pisum sativum] gi|344006|dbj|BAA02553.1|
precursor for 23-kDa protein of photosystem II [Pisum
sativum]
Length = 259
Score = 460 bits (1184), Expect = e-128
Identities = 229/260 (88%), Positives = 245/260 (94%), Gaps = 1/260 (0%)
Frame = -2
Query: 935 MASTQCFLHH-HALTTPTRTSSQRQVVSIKPNQIVCRAQKQQDVEDVSPVSRRLALTLLI 759
MASTQCFLHH +A+TTPTRT SQRQVV+ KPN IVC+AQKQ DV D + VSRRLAL++LI
Sbjct: 1 MASTQCFLHHQYAITTPTRTLSQRQVVTTKPNHIVCKAQKQDDVVD-AVVSRRLALSVLI 59
Query: 758 GAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPGQV 579
GAAAVGSKVSPADAAYGEAANVFGK K+NTD+LPYNGDGFKL +PAKWNPSKEREFPGQV
Sbjct: 60 GAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQV 119
Query: 578 LRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTN 399
LRYEDNFDATSNVSV++ TDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTN
Sbjct: 120 LRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTN 179
Query: 398 AVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICQAQAGDK 219
AVAVANILESSAPV+GGKQYYN+SVLTRTADGDEGGKHQ+ITATV DGKLYIC+AQAGDK
Sbjct: 180 AVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDK 239
Query: 218 RWFKGARKFVESAASSFSVA 159
RWFKGARKFVE ASSFSVA
Sbjct: 240 RWFKGARKFVEDTASSFSVA 259
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane
protein) gi|1771778|emb|CAA67696.1| 23 kDa oxygen
evolving protein of photosystem II [Solanum tuberosum]
Length = 260
Score = 419 bits (1078), Expect = e-116
Identities = 211/261 (80%), Positives = 235/261 (89%), Gaps = 3/261 (1%)
Frame = -2
Query: 932 ASTQCFLH-HHAL-TTPTRTSSQRQVVSIKPNQIVCRAQKQQDVEDVS-PVSRRLALTLL 762
ASTQCFLH +HAL ++P RTSS V S KPNQ++CRAQKQ D + S VSRRLALTLL
Sbjct: 3 ASTQCFLHQYHALRSSPARTSS---VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTLL 59
Query: 761 IGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPGQ 582
IG AA+GSKVSPADAAYGEAANVFGKPK NTDFLPYNGDGFKL IPAKWNPSKE EFPGQ
Sbjct: 60 IGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQ 119
Query: 581 VLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDT 402
VLRYEDNFD+TSN+ V +T TDKKSITDYGSPEEFLSKVDYLLGKQA+FG+TDSEGGF++
Sbjct: 120 VLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFES 179
Query: 401 NAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICQAQAGD 222
AVA AN+LE+S+ VGGKQYY +SVLTRTADGDEGGKHQ+ITATVNDGKLYIC+AQAGD
Sbjct: 180 GAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGD 239
Query: 221 KRWFKGARKFVESAASSFSVA 159
KRWFKGA+KFVE+AA+SFS+A
Sbjct: 240 KRWFKGAKKFVENAATSFSIA 260
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane
protein) gi|81479|pir||S00005 photosystem II
oxygen-evolving complex protein 2 precursor - spinach
gi|21265|emb|CAA29055.1| 23 kDa OEC protein [Spinacia
oleracea] gi|225596|prf||1307179A luminal protein 23kD
Length = 267
Score = 417 bits (1072), Expect = e-115
Identities = 209/267 (78%), Positives = 238/267 (88%), Gaps = 8/267 (2%)
Frame = -2
Query: 935 MASTQCFLHHHA-LTTPTR---TSSQR-QVVSIKPNQIVCRAQKQQDVEDV---SPVSRR 780
MAST CFLHHHA +++P +++QR Q VSIKPNQIVC+AQKQ D E S VSRR
Sbjct: 1 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 60
Query: 779 LALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKE 600
LALT+LIGAAAVGSKVSPADAAYGEAANVFGKPK NT+F+PYNGDGFKL +P+KWNPSKE
Sbjct: 61 LALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKE 120
Query: 599 REFPGQVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDS 420
+EFPGQVLRYEDNFDATSN+SV++ TDKKSITD+GSPE+FLS+VDYLLGKQA+FG+TDS
Sbjct: 121 KEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDS 180
Query: 419 EGGFDTNAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYIC 240
EGGFD+ VA AN+LESS PVV GKQYY+++VLTRTADGDEGGKHQ+I ATV DGKLYIC
Sbjct: 181 EGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYIC 240
Query: 239 QAQAGDKRWFKGARKFVESAASSFSVA 159
+AQAGDKRWFKGA+KFVESA SSFSVA
Sbjct: 241 KAQAGDKRWFKGAKKFVESATSSFSVA 267
>sp|P29795|PSBP_LYCES Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane
protein) gi|72723|pir||F2TOX2 photosystem II
oxygen-evolving complex protein 2 precursor - tomato
gi|19317|emb|CAA44736.1| photosystem II 23 kDa protein
[Lycopersicon esculentum]
Length = 258
Score = 414 bits (1063), Expect = e-114
Identities = 206/260 (79%), Positives = 234/260 (89%), Gaps = 2/260 (0%)
Frame = -2
Query: 932 ASTQCFLH-HHAL-TTPTRTSSQRQVVSIKPNQIVCRAQKQQDVEDVSPVSRRLALTLLI 759
ASTQCFLH +HAL ++P RTSS V S KPNQ++CRAQKQ D + + VSRRLALTLLI
Sbjct: 3 ASTQCFLHQYHALRSSPARTSS---VSSPKPNQLICRAQKQDDASNAA-VSRRLALTLLI 58
Query: 758 GAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPGQV 579
G AA+GSKVSPADAAYGEAANVFGKPK NTDFLPYNGDGFKL +PAKWNPSKE E+PGQV
Sbjct: 59 GTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQV 118
Query: 578 LRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTN 399
LRYEDNFD+TSN+ V +T TDKKSITDYGSPEEFLSKVDYLLGKQA+FG+TDSEGGF++
Sbjct: 119 LRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESG 178
Query: 398 AVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICQAQAGDK 219
AVA N+LE+S+ VGGK+YY +SVLTRTADGDEGGKHQ+ITATVNDGKLYIC+AQAGDK
Sbjct: 179 AVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDK 238
Query: 218 RWFKGARKFVESAASSFSVA 159
RWFKGA+KFVE+AA+SFS+A
Sbjct: 239 RWFKGAKKFVENAATSFSIA 258
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane
protein) (OEC23) gi|6691487|dbj|BAA89317.1| 23kDa
polypeptide of the oxygen-evolving complex of
photosystem II [Cucumis sativus]
Length = 263
Score = 413 bits (1061), Expect = e-114
Identities = 209/263 (79%), Positives = 230/263 (86%), Gaps = 4/263 (1%)
Frame = -2
Query: 935 MASTQCFLHHHALTTPTRTSSQRQVVSI--KPNQIVCRAQKQQDV--EDVSPVSRRLALT 768
MAST CFLHHHALT R+SS + ++ P +VCRAQKQQ E+ VSRRLALT
Sbjct: 1 MASTSCFLHHHALTAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALT 60
Query: 767 LLIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFP 588
+LIGAAA+GSKVSPADAAYGEAANVFGKPKSNTD+LPY+GDGFKLSIP+KWNPSKEREFP
Sbjct: 61 VLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREFP 120
Query: 587 GQVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGF 408
GQVLRYEDNFD+ SN+SVII TDKKSI D+GSPEEFLSKVDYLLGKQA+FG+T SEGGF
Sbjct: 121 GQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGF 180
Query: 407 DTNAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICQAQA 228
D +AVA ANILE++A V GK YY VSVLTRTADGDEGGKHQ+ITATVNDGKLYIC+AQA
Sbjct: 181 DPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQA 240
Query: 227 GDKRWFKGARKFVESAASSFSVA 159
GDKRWFKGARKFVE AASSFSVA
Sbjct: 241 GDKRWFKGARKFVEGAASSFSVA 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 872,793,952
Number of Sequences: 1393205
Number of extensions: 19781820
Number of successful extensions: 53744
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 49917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53546
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 56296981496
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
