Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005087A_C01 KMC005087A_c01
(1225 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191557.1| putative protein; protein id: At3g59980.1, supp... 243 6e-63
dbj|BAC40045.1| unnamed protein product [Mus musculus] 142 8e-33
ref|NP_031952.1| small inducible cytokine subfamily E, member 1;... 142 8e-33
pir||B55053 endothelial monocyte-activating protein II precursor... 139 9e-32
sp|O54873|MCA1_CRIGR Multisynthetase complex auxiliary component... 139 9e-32
>ref|NP_191557.1| putative protein; protein id: At3g59980.1, supported by cDNA: 28016.,
supported by cDNA: gi_15028194, supported by cDNA:
gi_21281110 [Arabidopsis thaliana]
gi|11357607|pir||T47822 hypothetical protein F24G16.250 -
Arabidopsis thaliana gi|7019692|emb|CAB75817.1| putative
protein [Arabidopsis thaliana] gi|15028195|gb|AAK76594.1|
unknown protein [Arabidopsis thaliana]
gi|21281111|gb|AAM44914.1| unknown protein [Arabidopsis
thaliana] gi|21555448|gb|AAM63861.1| unknown [Arabidopsis
thaliana]
Length = 273
Score = 243 bits (619), Expect = 6e-63
Identities = 122/204 (59%), Positives = 157/204 (76%)
Frame = -1
Query: 1072 SFCTLSSSSTEEAVTEVTPAGGNGETEKSVSVKDSAALLDIRVGQILRAWKHEEADSLYV 893
+FCT + + + + + E+ +VK++A LLDI+VG+I++AW+HEEADSLYV
Sbjct: 72 TFCTAAPDAGTTVSADESEKKSESQKEEE-NVKETANLLDIKVGRIVKAWQHEEADSLYV 130
Query: 892 EEVDIGEPEPRIICSGLVNYIPLEHLQGKKVIVLSNLKARNMRGVKSSGMLMAASDAKHE 713
EEVDIGE EPRIICSGLV Y+PL+ LQG V+VL+NLK RNMRGVKS GML+AASDA HE
Sbjct: 131 EEVDIGEAEPRIICSGLVKYVPLDLLQGASVVVLANLKPRNMRGVKSCGMLLAASDAAHE 190
Query: 712 NVELLFPPEEATPGERIWFGSEDEKDNQPAAAAPNQIQKKKIWELVQPHLKTDASCTALL 533
NVELL PPE + PG+R+WFG+E++ + P A PN++QKKK+WELVQP LKTDAS ++L
Sbjct: 191 NVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAPPNKVQKKKMWELVQPLLKTDASGVSML 250
Query: 532 GGVHVMRTSLGSVACQSLQNANIS 461
H+MRTS G V +SL+NANIS
Sbjct: 251 -KEHLMRTSSGLVTSKSLRNANIS 273
>dbj|BAC40045.1| unnamed protein product [Mus musculus]
Length = 319
Score = 142 bits (359), Expect = 8e-33
Identities = 89/221 (40%), Positives = 119/221 (53%), Gaps = 17/221 (7%)
Frame = -1
Query: 1075 PSFCTLSSSSTEEAVTEVTPAGGNGETEKSVSVKDS--------------AALLDIRVGQ 938
PS T +S +T+E + +TEK K+ A+ LD+RVG
Sbjct: 109 PSVATTASLATKEQIKAGEEKKVKEKTEKKGEKKEKQQSAAASTDSKPIDASRLDLRVGC 168
Query: 937 ILRAWKHEEADSLYVEEVDIGEPEPRIICSGLVNYIPLEHLQGKKVIVLSNLKARNMRGV 758
I+ A KH +ADSLYVEEVD+GE PR + SGLVN++PLE +Q + V++L NLK MRGV
Sbjct: 169 IVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGV 228
Query: 757 KSSGMLMAASDAKHENVELLFPPEEATPGERIWFGS---EDEKDNQPAAAAPNQIQKKKI 587
S M+M AS E VE+L PP + PG+RI F + E +K+ P KKKI
Sbjct: 229 LSQAMVMCASSP--EKVEILAPPNGSVPGDRITFDAFPGEPDKELNP---------KKKI 277
Query: 586 WELVQPHLKTDASCTALLGGVHVMRTSLGSVACQSLQNANI 464
WE +QP L T+A C A G G Q++ N+ I
Sbjct: 278 WEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGI 318
>ref|NP_031952.1| small inducible cytokine subfamily E, member 1; endothelial monocyte
activating polypeptide 2 [Mus musculus]
gi|17379579|sp|P31230|MCA1_MOUSE Multisynthetase complex
auxiliary component p43 [Contains: Endothelial-monocyte
activating polypeptide II (EMAP-II) (Small inducible
cytokine subfamily E member 1)] gi|1083307|pir||A55053
endothelial monocyte-activating protein II precursor -
mouse gi|498912|gb|AAA62203.1| endothelial-monocyte
activating polypeptide II gi|12805191|gb|AAH02054.1|
endothelial monocyte activating polypeptide 2 [Mus
musculus]
Length = 310
Score = 142 bits (359), Expect = 8e-33
Identities = 88/221 (39%), Positives = 119/221 (53%), Gaps = 17/221 (7%)
Frame = -1
Query: 1075 PSFCTLSSSSTEEAVTEVTPAGGNGETEKSVSVKDS--------------AALLDIRVGQ 938
PS T +S +T+E + +TEK K+ A+ LD+R+G
Sbjct: 100 PSVATTASPATKEQIKAGEEKKVKEKTEKKGEKKEKQQSAAASTDSKPIDASRLDLRIGC 159
Query: 937 ILRAWKHEEADSLYVEEVDIGEPEPRIICSGLVNYIPLEHLQGKKVIVLSNLKARNMRGV 758
I+ A KH +ADSLYVEEVD+GE PR + SGLVN++PLE +Q + V++L NLK MRGV
Sbjct: 160 IVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGV 219
Query: 757 KSSGMLMAASDAKHENVELLFPPEEATPGERIWFGS---EDEKDNQPAAAAPNQIQKKKI 587
S M+M AS E VE+L PP + PG+RI F + E +K+ P KKKI
Sbjct: 220 LSQAMVMCASSP--EKVEILAPPNGSVPGDRITFDAFPGEPDKELNP---------KKKI 268
Query: 586 WELVQPHLKTDASCTALLGGVHVMRTSLGSVACQSLQNANI 464
WE +QP L T+A C A G G Q++ N+ I
Sbjct: 269 WEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGI 309
>pir||B55053 endothelial monocyte-activating protein II precursor - human
Length = 310
Score = 139 bits (350), Expect = 9e-32
Identities = 96/248 (38%), Positives = 128/248 (50%), Gaps = 18/248 (7%)
Frame = -1
Query: 1153 KATRFGSKFPFFSLSSSSSAKTPSGFPSFCTLSSSSTEEAVT--------EVTPAGGNGE 998
K RF S P + S S S + T SS T+E + E G +
Sbjct: 76 KQIRFPSGTPLHANSMVSENVIQS---TAVTTVSSGTKEQIKGGDEKKAKEKIEKKGEKK 132
Query: 997 TEKSVSVKDSA-------ALLDIRVGQILRAWKHEEADSLYVEEVDIGEPEPRIICSGLV 839
+K S+ SA + LD+R+G I+ A KH +ADSLYVEEVD+GE PR + SGLV
Sbjct: 133 EKKQQSIAGSADSKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLV 192
Query: 838 NYIPLEHLQGKKVIVLSNLKARNMRGVKSSGMLMAASDAKHENVELLFPPEEATPGERIW 659
N++PLE +Q + VI+L NLK MRGV S M+M AS E +E+L PP + PG+RI
Sbjct: 193 NHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP--EKIEILAPPNGSVPGDRIT 250
Query: 658 FGS---EDEKDNQPAAAAPNQIQKKKIWELVQPHLKTDASCTALLGGVHVMRTSLGSVAC 488
F + E +K+ P KKKIWE +QP L T+ C A GV G
Sbjct: 251 FDAFPGEPDKELNP---------KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRA 301
Query: 487 QSLQNANI 464
Q++ N+ I
Sbjct: 302 QTMSNSGI 309
>sp|O54873|MCA1_CRIGR Multisynthetase complex auxiliary component p43 [Contains:
Endothelial-monocyte activating polypeptide II (EMAP-II)
(Small inducible cytokine subfamily E member 1)]
gi|2754814|gb|AAB95207.1| multisynthetase complex
auxiliary component p43 [Cricetulus griseus]
Length = 359
Score = 139 bits (350), Expect = 9e-32
Identities = 90/232 (38%), Positives = 125/232 (53%), Gaps = 14/232 (6%)
Frame = -1
Query: 1117 SLSSSSSAKTPSGFPSFCTLSSSST----EEAVTEVTPAGGNGETEKSVSVKDSA----- 965
S+ S+S T S C++ S E+ V E T G + +K S SA
Sbjct: 143 SVIQSTSVSTIS-----CSIKEHSKGGGEEKKVKEKTDKKGEKKEKKLQSAAPSADSKPV 197
Query: 964 --ALLDIRVGQILRAWKHEEADSLYVEEVDIGEPEPRIICSGLVNYIPLEHLQGKKVIVL 791
+ LD+R+G+I+ KH +ADSLYVEEVD+GE PR + SGLVN++PL+ +Q + V++L
Sbjct: 198 DVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLL 257
Query: 790 SNLKARNMRGVKSSGMLMAASDAKHENVELLFPPEEATPGERIWFGS---EDEKDNQPAA 620
NLK MRG+ S M+M AS E VE+L PP + PG+RI F + E +K+ P
Sbjct: 258 CNLKPAKMRGILSQAMVMCASSP--EKVEILAPPNGSVPGDRITFDAFPGEPDKELNP-- 313
Query: 619 AAPNQIQKKKIWELVQPHLKTDASCTALLGGVHVMRTSLGSVACQSLQNANI 464
KKKIWE +QP L T+A C A G G Q++ N+ I
Sbjct: 314 -------KKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMANSGI 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,108,496,463
Number of Sequences: 1393205
Number of extensions: 26182286
Number of successful extensions: 84626
Number of sequences better than 10.0: 275
Number of HSP's better than 10.0 without gapping: 73122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82590
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 76753862177
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
