Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005084A_C01 KMC005084A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568757.1| putative protein; protein id: At5g51330.1, supp... 81 8e-15
dbj|BAB09744.1| gb|AAD12714.1~gene_id:MFG13.3~similar to unknown... 81 8e-15
ref|NP_197751.1| putative protein; protein id: At5g23610.1 [Arab... 77 2e-13
ref|NP_178290.1| hypothetical protein; protein id: At2g01810.1 [... 49 3e-05
ref|NP_176791.1| PHD-finger protein, putative; protein id: At1g6... 49 5e-05
>ref|NP_568757.1| putative protein; protein id: At5g51330.1, supported by cDNA:
gi_16033413 [Arabidopsis thaliana]
gi|16033414|gb|AAL13233.1| SWITCH1 splice variant S
[Arabidopsis thaliana]
Length = 578
Score = 81.3 bits (199), Expect = 8e-15
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 354 KRKTKKHESKERWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLD 533
KRK+++ + +RWS ERY LAE++M +V+KE+ A F N I RP LR ARK IGDTGLLD
Sbjct: 224 KRKSER-KFIDRWSVERYKLAERNMLKVMKEKNAVFGNSILRPELRSEARKLIGDTGLLD 282
Query: 534 HLLKHIEG 557
HLLKH+ G
Sbjct: 283 HLLKHMAG 290
>dbj|BAB09744.1| gb|AAD12714.1~gene_id:MFG13.3~similar to unknown protein
[Arabidopsis thaliana] gi|16033411|gb|AAL13232.1|
SWITCH1 splice variant L [Arabidopsis thaliana]
gi|18483290|gb|AAL73988.1|AF466153_1 DYAD [Arabidopsis
thaliana]
Length = 635
Score = 81.3 bits (199), Expect = 8e-15
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 354 KRKTKKHESKERWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLD 533
KRK+++ + +RWS ERY LAE++M +V+KE+ A F N I RP LR ARK IGDTGLLD
Sbjct: 281 KRKSER-KFIDRWSVERYKLAERNMLKVMKEKNAVFGNSILRPELRSEARKLIGDTGLLD 339
Query: 534 HLLKHIEG 557
HLLKH+ G
Sbjct: 340 HLLKHMAG 347
>ref|NP_197751.1| putative protein; protein id: At5g23610.1 [Arabidopsis thaliana]
gi|8809698|dbj|BAA97239.1|
gb|AAD12714.1~gene_id:MQM1.12~similar to unknown protein
[Arabidopsis thaliana]
Length = 464
Score = 76.6 bits (187), Expect = 2e-13
Identities = 33/57 (57%), Positives = 45/57 (78%)
Frame = +3
Query: 387 RWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLKHIEG 557
RW+ ER AEQ++ +++KE+GATF+ P+TR LR+ AR IGDTGLLDH LKH++G
Sbjct: 89 RWNNERIKFAEQTLADIMKEKGATFEKPVTRQLLRVIARSKIGDTGLLDHSLKHMDG 145
>ref|NP_178290.1| hypothetical protein; protein id: At2g01810.1 [Arabidopsis
thaliana] gi|25410935|pir||D84429 hypothetical protein
At2g01810 [imported] - Arabidopsis thaliana
gi|4220491|gb|AAD12714.1| hypothetical protein
[Arabidopsis thaliana]
Length = 697
Score = 49.3 bits (116), Expect = 3e-05
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +3
Query: 387 RWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLKHIE 554
RW R + A Q++ +V KE +T I+R LR A R IGDTGL+D LLKHI+
Sbjct: 373 RWPGRRLNDAAQAVLKVFKERNST----ISRQDLREAVRSSIGDTGLIDFLLKHID 424
>ref|NP_176791.1| PHD-finger protein, putative; protein id: At1g66170.1 [Arabidopsis
thaliana] gi|25404593|pir||E96686 probable PHD-finger
protein F15E12.11 [imported] - Arabidopsis thaliana
gi|12322609|gb|AAG51303.1|AC026480_10 PHD-finger
protein, putative [Arabidopsis thaliana]
Length = 653
Score = 48.5 bits (114), Expect = 5e-05
Identities = 26/53 (49%), Positives = 33/53 (62%)
Frame = +3
Query: 387 RWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLK 545
RW R A + + E LKE A N +TR +R +AR HIGDTGLLD++LK
Sbjct: 290 RWPVRRLIFAAEVIVESLKEMKALKQNGMTRQDVRDSARLHIGDTGLLDYVLK 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,885,493
Number of Sequences: 1393205
Number of extensions: 11489274
Number of successful extensions: 39653
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 36853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39401
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
