Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005082A_C01 KMC005082A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_470921.1| similar to B. subtilis late competence protein ... 31 9.3
gb|AAK30648.1| maturase K [Sedum modestum] 31 9.3
>ref|NP_470921.1| similar to B. subtilis late competence protein ComC (type IV
prepilin peptidase) [Listeria innocua]
gi|25517374|pir||AH1630 B. subtilis late competence
protein ComC (type IV prepilin peptidase) homolog comC
[imported] - Listeria innocua (strain Clip11262)
gi|16414072|emb|CAC96816.1| similar to B. subtilis late
competence protein ComC (type IV prepilin peptidase)
[Listeria innocua]
Length = 236
Score = 30.8 bits (68), Expect = 9.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 309 VTFLLLSPSPLQISLCIIMKQC-RVPLNFI*KFNQCHHCECCPSLRPMSPL 160
V FLL+ S + IS + +C + +F+ +F++C+HC+ S M P+
Sbjct: 2 VYFLLIIYSSIFISFIQVAGECFPIKKSFLFRFSECNHCQKTLSFSQMIPI 52
>gb|AAK30648.1| maturase K [Sedum modestum]
Length = 377
Score = 30.8 bits (68), Expect = 9.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 320 RSQVSLFFSYHHHLCKSPFVL 258
R++ SLFF Y+ HLC+S F+L
Sbjct: 200 RNKKSLFFLYNSHLCESDFIL 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,219,707
Number of Sequences: 1393205
Number of extensions: 8043792
Number of successful extensions: 16466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16462
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
