Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005079A_C01 KMC005079A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44123.1| N3 like protein [Medicago truncatula] 86 3e-16
ref|NP_199892.1| MtN3-like protein; protein id: At5g50790.1, sup... 75 8e-13
gb|AAG34696.1| NEC1 [Petunia x hybrida] 62 9e-09
gb|AAM65058.1| MtN3-like protein [Arabidopsis thaliana] 62 9e-09
ref|NP_199893.1| MtN3-like protein; protein id: At5g50800.1, sup... 62 9e-09
>emb|CAC44123.1| N3 like protein [Medicago truncatula]
Length = 255
Score = 86.3 bits (212), Expect = 3e-16
Identities = 45/63 (71%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = -2
Query: 653 FYGLLHKDFYIALPNTLGFVFGIIQMVMYLIYRNATPPVELKEDPVMKVQELN-GHVIDV 477
FYGLL +D+Y+ALPNTLGFVFGIIQMV+YLIYRNATP VE MK QEL+ GH+IDV
Sbjct: 182 FYGLLLRDYYVALPNTLGFVFGIIQMVVYLIYRNATPVVEAP----MKGQELSGGHIIDV 237
Query: 476 IDI 468
+ I
Sbjct: 238 VKI 240
>ref|NP_199892.1| MtN3-like protein; protein id: At5g50790.1, supported by cDNA:
114681., supported by cDNA: gi_15450935, supported by
cDNA: gi_17978772 [Arabidopsis thaliana]
gi|8777402|dbj|BAA96992.1| MtN3-like protein
[Arabidopsis thaliana] gi|15450936|gb|AAK96739.1|
MtN3-like protein [Arabidopsis thaliana]
gi|17978773|gb|AAL47380.1| MtN3-like protein
[Arabidopsis thaliana] gi|21536902|gb|AAM61234.1|
MtN3-like protein [Arabidopsis thaliana]
Length = 289
Score = 75.1 bits (183), Expect = 8e-13
Identities = 39/88 (44%), Positives = 58/88 (65%)
Frame = -2
Query: 653 FYGLLHKDFYIALPNTLGFVFGIIQMVMYLIYRNATPPVELKEDPVMKVQELNGHVIDVI 474
FYGLL KD IALPN LGF+FG++QM+++LIY+ P ++ E P +K+Q+++ HV+DV
Sbjct: 181 FYGLLLKDMNIALPNVLGFIFGVLQMILFLIYKK--PGTKVLEPPGIKLQDISEHVVDV- 237
Query: 473 DIVKLSDMVPSDPTHIVVQSDPNGKQET 390
V+LS MV + +V D + T
Sbjct: 238 --VRLSTMVCNSQMRTLVPQDSADMEAT 263
>gb|AAG34696.1| NEC1 [Petunia x hybrida]
Length = 265
Score = 61.6 bits (148), Expect = 9e-09
Identities = 28/62 (45%), Positives = 41/62 (65%)
Frame = -2
Query: 653 FYGLLHKDFYIALPNTLGFVFGIIQMVMYLIYRNATPPVELKEDPVMKVQELNGHVIDVI 474
FYG KDFYIA PN LGF+FGI+QM++Y +Y+++ + K DPV + + V +I
Sbjct: 181 FYGFFKKDFYIAFPNILGFLFGIVQMLLYFVYKDSKRIDDEKSDPVREATKSKEGVEIII 240
Query: 473 DI 468
+I
Sbjct: 241 NI 242
>gb|AAM65058.1| MtN3-like protein [Arabidopsis thaliana]
Length = 294
Score = 61.6 bits (148), Expect = 9e-09
Identities = 33/82 (40%), Positives = 47/82 (57%)
Frame = -2
Query: 653 FYGLLHKDFYIALPNTLGFVFGIIQMVMYLIYRNATPPVELKEDPVMKVQELNGHVIDVI 474
FYGL KDFY+ALPN LG G +QM++Y+I++ PV K D K ++++ H I
Sbjct: 182 FYGLAIKDFYVALPNVLGAFLGAVQMILYIIFKYYKTPVAQKTD---KSKDVSDH---SI 235
Query: 473 DIVKLSDMVPSDPTHIVVQSDP 408
DI KL+ ++P V P
Sbjct: 236 DIAKLTTVIPGAVLDSAVHQPP 257
>ref|NP_199893.1| MtN3-like protein; protein id: At5g50800.1, supported by cDNA:
36264. [Arabidopsis thaliana] gi|9758527|dbj|BAB08903.1|
MtN3-like protein [Arabidopsis thaliana]
Length = 294
Score = 61.6 bits (148), Expect = 9e-09
Identities = 33/82 (40%), Positives = 47/82 (57%)
Frame = -2
Query: 653 FYGLLHKDFYIALPNTLGFVFGIIQMVMYLIYRNATPPVELKEDPVMKVQELNGHVIDVI 474
FYGL KDFY+ALPN LG G +QM++Y+I++ PV K D K ++++ H I
Sbjct: 182 FYGLAIKDFYVALPNVLGAFLGAVQMILYIIFKYYKTPVAQKTD---KSKDVSDH---SI 235
Query: 473 DIVKLSDMVPSDPTHIVVQSDP 408
DI KL+ ++P V P
Sbjct: 236 DIAKLTTVIPGAVLDSAVHQPP 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,277,590
Number of Sequences: 1393205
Number of extensions: 12454409
Number of successful extensions: 31583
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 29367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31405
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
