Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005076A_C01 KMC005076A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC06237.1| AGAMOUS homolog [Populus balsamifera subsp. trich... 33 0.003
pir||T05033 floral homeotic protein agamous - Arabidopsis thalia... 42 0.006
sp|P17839|AG_ARATH AGAMOUS protein 42 0.006
ref|NP_567569.2| floral homeotic protein agamous (AGAMOUS); prot... 42 0.006
emb|CAA37642.1| agamous gene product (AA 1-285) [Arabidopsis tha... 42 0.006
>gb|AAC06237.1| AGAMOUS homolog [Populus balsamifera subsp. trichocarpa]
Length = 241
Score = 33.1 bits (74), Expect(2) = 0.003
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1
Query: 483 QQQQFDSRGYFQVTGLQPAYTYS 415
Q Q +DSR Y QV GLQPA YS
Sbjct: 209 QSQPYDSRNYSQVNGLQPASHYS 231
Score = 28.9 bits (63), Expect(2) = 0.003
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = -2
Query: 389 LQPSSQYARQDHMSLQLV 336
LQP+S Y+ QD M+LQLV
Sbjct: 224 LQPASHYSHQDQMALQLV 241
>pir||T05033 floral homeotic protein agamous - Arabidopsis thaliana (fragment)
gi|25307908|pir||A85214 floral homeotic protein agamous
[imported] - Arabidopsis thaliana
gi|2832624|emb|CAA16753.1| floral homeotic protein
agamous [Arabidopsis thaliana]
gi|7268690|emb|CAB78898.1| floral homeotic protein
agamous [Arabidopsis thaliana]
Length = 284
Score = 41.6 bits (96), Expect = 0.006
Identities = 22/47 (46%), Positives = 24/47 (50%)
Frame = -1
Query: 519 SNYESMQSQQQQQQQQFDSRGYFQVTGLQPAYTYSVFAPRPDLITTQ 379
SNYE + Q Q Q FDSR YFQV LQP + A R D Q
Sbjct: 236 SNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQ 282
>sp|P17839|AG_ARATH AGAMOUS protein
Length = 252
Score = 41.6 bits (96), Expect = 0.006
Identities = 22/47 (46%), Positives = 24/47 (50%)
Frame = -1
Query: 519 SNYESMQSQQQQQQQQFDSRGYFQVTGLQPAYTYSVFAPRPDLITTQ 379
SNYE + Q Q Q FDSR YFQV LQP + A R D Q
Sbjct: 204 SNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQ 250
>ref|NP_567569.2| floral homeotic protein agamous (AGAMOUS); protein id: At4g18960.1
[Arabidopsis thaliana]
Length = 310
Score = 41.6 bits (96), Expect = 0.006
Identities = 22/47 (46%), Positives = 24/47 (50%)
Frame = -1
Query: 519 SNYESMQSQQQQQQQQFDSRGYFQVTGLQPAYTYSVFAPRPDLITTQ 379
SNYE + Q Q Q FDSR YFQV LQP + A R D Q
Sbjct: 262 SNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQ 308
>emb|CAA37642.1| agamous gene product (AA 1-285) [Arabidopsis thaliana]
gi|226968|prf||1612343A agamous gene
Length = 285
Score = 41.6 bits (96), Expect = 0.006
Identities = 22/47 (46%), Positives = 24/47 (50%)
Frame = -1
Query: 519 SNYESMQSQQQQQQQQFDSRGYFQVTGLQPAYTYSVFAPRPDLITTQ 379
SNYE + Q Q Q FDSR YFQV LQP + A R D Q
Sbjct: 237 SNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQ 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,696,477
Number of Sequences: 1393205
Number of extensions: 8057296
Number of successful extensions: 63450
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 25737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48620
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
