Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005071A_C01 KMC005071A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568808.1| putative protein; protein id: At5g54430.1, supp... 131 8e-30
dbj|BAA97516.1| gene_id:F24B18.5~pir||T05756~similar to unknown ... 131 8e-30
pir||T05756 hypothetical protein M4I22.130 - Arabidopsis thalian... 126 3e-28
ref|NP_567770.1| putative protein; protein id: At4g27320.1, supp... 126 3e-28
dbj|BAC65369.1| OSJNBb0041B22.10 [Oryza sativa (japonica cultiva... 119 4e-26
>ref|NP_568808.1| putative protein; protein id: At5g54430.1, supported by cDNA:
37617., supported by cDNA: gi_17979328 [Arabidopsis
thaliana] gi|17979329|gb|AAL49890.1| unknown protein
[Arabidopsis thaliana] gi|21593268|gb|AAM65217.1|
unknown [Arabidopsis thaliana]
gi|21689829|gb|AAM67558.1| unknown protein [Arabidopsis
thaliana] gi|26452079|dbj|BAC43129.1| unknown protein
[Arabidopsis thaliana]
Length = 242
Score = 131 bits (329), Expect = 8e-30
Identities = 67/92 (72%), Positives = 74/92 (79%), Gaps = 3/92 (3%)
Frame = -1
Query: 618 HDMKERLCLEVERLGLSAVIMGSRGFGAVR-RGSDGKLGSVSDYCVHHCVCPVVVVRYPE 442
HDM+ERLCLE+ERLGLSAVIMGSRGFGA + RGSDGKLGSVSDYCVHHCVCPVVVVRYP+
Sbjct: 147 HDMRERLCLEIERLGLSAVIMGSRGFGAEKKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 206
Query: 441 DRDDAVVADAVVAVKEG--DEGEAVIKPVSEH 352
DRD V +V VK G D+G+ V S H
Sbjct: 207 DRDGPV---PIVTVKSGGDDDGDVVAASASAH 235
>dbj|BAA97516.1| gene_id:F24B18.5~pir||T05756~similar to unknown protein
[Arabidopsis thaliana]
Length = 250
Score = 131 bits (329), Expect = 8e-30
Identities = 67/92 (72%), Positives = 74/92 (79%), Gaps = 3/92 (3%)
Frame = -1
Query: 618 HDMKERLCLEVERLGLSAVIMGSRGFGAVR-RGSDGKLGSVSDYCVHHCVCPVVVVRYPE 442
HDM+ERLCLE+ERLGLSAVIMGSRGFGA + RGSDGKLGSVSDYCVHHCVCPVVVVRYP+
Sbjct: 147 HDMRERLCLEIERLGLSAVIMGSRGFGAEKKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 206
Query: 441 DRDDAVVADAVVAVKEG--DEGEAVIKPVSEH 352
DRD V +V VK G D+G+ V S H
Sbjct: 207 DRDGPV---PIVTVKSGGDDDGDVVAASASAH 235
>pir||T05756 hypothetical protein M4I22.130 - Arabidopsis thaliana
gi|3269293|emb|CAA19726.1| putative protein [Arabidopsis
thaliana] gi|7269585|emb|CAB79587.1| putative protein
[Arabidopsis thaliana]
Length = 259
Score = 126 bits (316), Expect = 3e-28
Identities = 65/108 (60%), Positives = 76/108 (70%)
Frame = -1
Query: 618 HDMKERLCLEVERLGLSAVIMGSRGFGAVRRGSDGKLGSVSDYCVHHCVCPVVVVRYPED 439
HDM+ERLCLE ERL LSAVIMGSRGFGA +RGSDGKLGSVSDYCVHHCVCPVVVVRYP+D
Sbjct: 149 HDMRERLCLETERLNLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 208
Query: 438 RDDAVVADAVVAVKEGDEGEAVIKPVSEHKKED*LESSNYSTISAECS 295
RD V A + EA++ S +D + + + I+A S
Sbjct: 209 RDGPAPPGNVGATR-----EAIVTVKSRRDDDDDDDEDHEAKIAAAAS 251
>ref|NP_567770.1| putative protein; protein id: At4g27320.1, supported by cDNA:
10313. [Arabidopsis thaliana] gi|21536562|gb|AAM60894.1|
unknown [Arabidopsis thaliana]
gi|21703134|gb|AAM74507.1| AT4g27320/M4I22_130
[Arabidopsis thaliana] gi|23505839|gb|AAN28779.1|
At4g27320/M4I22_130 [Arabidopsis thaliana]
Length = 260
Score = 126 bits (316), Expect = 3e-28
Identities = 65/108 (60%), Positives = 76/108 (70%)
Frame = -1
Query: 618 HDMKERLCLEVERLGLSAVIMGSRGFGAVRRGSDGKLGSVSDYCVHHCVCPVVVVRYPED 439
HDM+ERLCLE ERL LSAVIMGSRGFGA +RGSDGKLGSVSDYCVHHCVCPVVVVRYP+D
Sbjct: 149 HDMRERLCLETERLNLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 208
Query: 438 RDDAVVADAVVAVKEGDEGEAVIKPVSEHKKED*LESSNYSTISAECS 295
RD V A + EA++ S +D + + + I+A S
Sbjct: 209 RDGPAPPGNVGATR-----EAIVTVKSRRDDDDDDDEDHEAKIAAAAS 251
>dbj|BAC65369.1| OSJNBb0041B22.10 [Oryza sativa (japonica cultivar-group)]
Length = 268
Score = 119 bits (297), Expect = 4e-26
Identities = 61/92 (66%), Positives = 66/92 (71%)
Frame = -1
Query: 618 HDMKERLCLEVERLGLSAVIMGSRGFGAVRRGSDGKLGSVSDYCVHHCVCPVVVVRYPED 439
HDMKERLCLEVERLGLSAVIMGS+GFGA RR S G+LGSVSDYCVHHCVCPVVVVR+P+
Sbjct: 168 HDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDYCVHHCVCPVVVVRFPD- 226
Query: 438 RDDAVVADAVVAVKEGDEGEAVIKPVSEHKKE 343
D E GE V+ PV E E
Sbjct: 227 -DGVAEGGEAGGASELAVGEEVLHPVPEEDAE 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,204,712
Number of Sequences: 1393205
Number of extensions: 12106001
Number of successful extensions: 113059
Number of sequences better than 10.0: 937
Number of HSP's better than 10.0 without gapping: 52024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81949
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
