Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005067A_C01 KMC005067A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566241.1| DNA-damage-repair/toleration protein DRT102; pr... 156 1e-37
sp|Q05212|D102_ARATH DNA-damage-repair/toleration protein DRT102... 156 1e-37
dbj|BAC10886.1| putative DNA-damage-repair/toleration protein DR... 153 1e-36
gb|ZP_00057154.1| hypothetical protein [Thermobifida fusca] 36 0.24
pir||S26689 hypothetical protein hc1 - mouse (fragment) gi|13339... 35 0.54
>ref|NP_566241.1| DNA-damage-repair/toleration protein DRT102; protein id:
At3g04880.1, supported by cDNA: gi_15529164 [Arabidopsis
thaliana] gi|15529165|gb|AAK97677.1| AT3g04880/T9J14_17
[Arabidopsis thaliana] gi|23505883|gb|AAN28801.1|
At3g04880/T9J14_17 [Arabidopsis thaliana]
Length = 310
Score = 156 bits (395), Expect = 1e-37
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = -2
Query: 528 GSVEPAHHHTFGHDLVVMEGRKSVWNLTKEERHDLTVGDYLFTPAGDVHRVKYYEDTDFF 349
GSVEPAHHHTFGHDLVV++G+KSVWNL+K+ER DL GDYLFTPAGDVHRVKY+EDT+FF
Sbjct: 225 GSVEPAHHHTFGHDLVVIKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFF 284
Query: 348 IKWDGHWDMFFDEDLQTAKDAIDKE 274
I WDGHWD+F DEDL+TAK AI++E
Sbjct: 285 ITWDGHWDIFLDEDLETAKKAIEEE 309
>sp|Q05212|D102_ARATH DNA-damage-repair/toleration protein DRT102 gi|479739|pir||S35271
DNA-damage repair protein DRT102 - Arabidopsis thaliana
gi|166928|gb|AAA72353.1| [Arabidopsis thaliana
unidentified mRNA sequence, complete cds.], gene product
gi|12322863|gb|AAG51425.1|AC009465_25
DNA-damage-repair/toleration protein DRT102; 57822-58514
[Arabidopsis thaliana]
Length = 230
Score = 156 bits (395), Expect = 1e-37
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = -2
Query: 528 GSVEPAHHHTFGHDLVVMEGRKSVWNLTKEERHDLTVGDYLFTPAGDVHRVKYYEDTDFF 349
GSVEPAHHHTFGHDLVV++G+KSVWNL+K+ER DL GDYLFTPAGDVHRVKY+EDT+FF
Sbjct: 145 GSVEPAHHHTFGHDLVVIKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFF 204
Query: 348 IKWDGHWDMFFDEDLQTAKDAIDKE 274
I WDGHWD+F DEDL+TAK AI++E
Sbjct: 205 ITWDGHWDIFLDEDLETAKKAIEEE 229
>dbj|BAC10886.1| putative DNA-damage-repair/toleration protein DRT102 [Oryza sativa
(japonica cultivar-group)]
Length = 315
Score = 153 bits (387), Expect = 1e-36
Identities = 66/86 (76%), Positives = 76/86 (87%)
Frame = -2
Query: 528 GSVEPAHHHTFGHDLVVMEGRKSVWNLTKEERHDLTVGDYLFTPAGDVHRVKYYEDTDFF 349
GSVEPAHHHTFGHDLVV+ G+K VWNLTK+E +DL GD+LFTPAGDVHRVKY+EDT+FF
Sbjct: 224 GSVEPAHHHTFGHDLVVISGKKKVWNLTKKESYDLVDGDFLFTPAGDVHRVKYFEDTEFF 283
Query: 348 IKWDGHWDMFFDEDLQTAKDAIDKEL 271
I+WDGHWD+F DEDL A+ AID EL
Sbjct: 284 IRWDGHWDIFLDEDLDAARRAIDAEL 309
>gb|ZP_00057154.1| hypothetical protein [Thermobifida fusca]
Length = 570
Score = 36.2 bits (82), Expect = 0.24
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 420 PSGRVSPPSSDSKHSSSLPSPPDHARTCGDAPAP 521
P G +SPP+ + + +SSLP PP AR AP P
Sbjct: 2 PGGGLSPPAPNPRRTSSLPRPPGTARGAVPAPKP 35
>pir||S26689 hypothetical protein hc1 - mouse (fragment)
gi|1333929|emb|CAA46991.1| HC1 ORF [Mus musculus]
Length = 118
Score = 35.0 bits (79), Expect = 0.54
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -2
Query: 255 VTLSMH-FERVFTCSSICVCMYCMVLIK*S*LSLWGCGFFCLSIESCIMLAISETYLY*G 79
+ +++H + +F+C S+CVCM C+ L S + ++ C C+ + + +
Sbjct: 28 IIITIHEVDSIFSCVSVCVCM-CVYLCVCSCMCVYACVCICVYVHVSVYACVCICVCMCM 86
Query: 78 YFCVC 64
Y CVC
Sbjct: 87 YACVC 91
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,543,263
Number of Sequences: 1393205
Number of extensions: 10129661
Number of successful extensions: 33602
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 30834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33383
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
