Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005066A_C01 KMC005066A_c01
(727 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase (UMP pyroph... 151 3e-53
ref|NP_190958.1| uracil phosphoribosyltransferase-like protein; ... 133 3e-46
gb|AAM61325.1| uracil phosphoribosyltransferase-like protein [Ar... 132 8e-46
gb|ZP_00108189.1| hypothetical protein [Nostoc punctiforme] 102 3e-33
ref|NP_440088.1| uracil phosphoribosyltransferase [Synechocystis... 105 2e-32
>sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase)
gi|7433941|pir||T03969 uracil phosphoribosyltransferase
(EC 2.4.2.9) - common tobacco gi|1848214|emb|CAA72093.1|
uracil phosphoribosyltransferase [Nicotiana tabacum]
Length = 224
Score = 151 bits (382), Expect(2) = 3e-53
Identities = 74/96 (77%), Positives = 84/96 (87%)
Frame = -1
Query: 727 ALAEHASSILPATKTYHLGLSRDEETLQPTIYLNKLPDKFAEGSKVFVVDPMLATGGTIV 548
ALAEHASSILPATKTYHLG+SR+EETLQP++YLNKLPDKF EGS+V VVDPMLATGGTIV
Sbjct: 96 ALAEHASSILPATKTYHLGISRNEETLQPSVYLNKLPDKFPEGSRVIVVDPMLATGGTIV 155
Query: 547 AALNLLKDRGVGNKQIRVISAVAAPPALQNAERTVP 440
AA++L+K+RGV N QI+VI AV APPALQ P
Sbjct: 156 AAIDLIKERGVDNSQIKVICAVGAPPALQKLSEKFP 191
Score = 79.7 bits (195), Expect(2) = 3e-53
Identities = 35/39 (89%), Positives = 38/39 (96%)
Frame = -2
Query: 456 LSEQFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSYGT 340
LSE+FPGLHVY GI+DPTVNDKGFIIPGLGDAGDRS+GT
Sbjct: 186 LSEKFPGLHVYAGILDPTVNDKGFIIPGLGDAGDRSFGT 224
>ref|NP_190958.1| uracil phosphoribosyltransferase-like protein; protein id:
At3g53900.1, supported by cDNA: 116841., supported by
cDNA: gi_15810300, supported by cDNA: gi_21281023
[Arabidopsis thaliana] gi|11258308|pir||T45930 uracil
phosphoribosyltransferase-like protein - Arabidopsis
thaliana gi|7630010|emb|CAB88352.1| uracil
phosphoribosyltransferase-like protein [Arabidopsis
thaliana] gi|15810301|gb|AAL07038.1| putative uracil
phosphoribosyltransferase [Arabidopsis thaliana]
gi|21281024|gb|AAM45046.1| putative uracil
phosphoribosyltransferase [Arabidopsis thaliana]
Length = 296
Score = 133 bits (335), Expect(2) = 3e-46
Identities = 63/96 (65%), Positives = 81/96 (83%)
Frame = -1
Query: 727 ALAEHASSILPATKTYHLGLSRDEETLQPTIYLNKLPDKFAEGSKVFVVDPMLATGGTIV 548
ALAEHASS+LPA K YHLG+SRDE+TL P++YLNKLPD+F + S+VF+VDP+LATGGTI+
Sbjct: 162 ALAEHASSVLPANKIYHLGVSRDEKTLLPSVYLNKLPDEFPKNSRVFLVDPVLATGGTIM 221
Query: 547 AALNLLKDRGVGNKQIRVISAVAAPPALQNAERTVP 440
AA++LLK+RG+ +QI+VI A+AAPPAL P
Sbjct: 222 AAMDLLKERGLSVQQIKVICAIAAPPALSKLNEKFP 257
Score = 74.3 bits (181), Expect(2) = 3e-46
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = -2
Query: 456 LSEQFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSYGT 340
L+E+FPGLHVY GIIDP VN+KG+IIPGLGDAGDRS+GT
Sbjct: 252 LNEKFPGLHVYAGIIDPEVNEKGYIIPGLGDAGDRSFGT 290
>gb|AAM61325.1| uracil phosphoribosyltransferase-like protein [Arabidopsis
thaliana]
Length = 296
Score = 132 bits (331), Expect(2) = 8e-46
Identities = 62/96 (64%), Positives = 80/96 (82%)
Frame = -1
Query: 727 ALAEHASSILPATKTYHLGLSRDEETLQPTIYLNKLPDKFAEGSKVFVVDPMLATGGTIV 548
ALAEHASS+LPA K YHLG+ RDE+TL P++YLNKLPD+F + S+VF+VDP+LATGGTI+
Sbjct: 162 ALAEHASSVLPANKIYHLGVXRDEKTLLPSVYLNKLPDEFPKNSRVFLVDPVLATGGTIM 221
Query: 547 AALNLLKDRGVGNKQIRVISAVAAPPALQNAERTVP 440
AA++LLK+RG+ +QI+VI A+AAPPAL P
Sbjct: 222 AAMDLLKERGLSVQQIKVICAIAAPPALSKLNEKFP 257
Score = 74.3 bits (181), Expect(2) = 8e-46
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = -2
Query: 456 LSEQFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSYGT 340
L+E+FPGLHVY GIIDP VN+KG+IIPGLGDAGDRS+GT
Sbjct: 252 LNEKFPGLHVYAGIIDPEVNEKGYIIPGLGDAGDRSFGT 290
>gb|ZP_00108189.1| hypothetical protein [Nostoc punctiforme]
Length = 237
Score = 102 bits (255), Expect(2) = 3e-33
Identities = 50/95 (52%), Positives = 62/95 (64%)
Frame = -1
Query: 724 LAEHASSILPATKTYHLGLSRDEETLQPTIYLNKLPDKFAEGSKVFVVDPMLATGGTIVA 545
L E A ++LP YHLGL+RDEETLQP YLNKLP+KF ++V + DPMLATGG+I+A
Sbjct: 110 LLEGAQTLLPLASVYHLGLARDEETLQPHCYLNKLPEKFDPQTRVLITDPMLATGGSIMA 169
Query: 544 ALNLLKDRGVGNKQIRVISAVAAPPALQNAERTVP 440
+ L RG R++ VAAPPALQ P
Sbjct: 170 TMAELTQRGADPSLTRIVCVVAAPPALQKLSEAYP 204
Score = 61.6 bits (148), Expect(2) = 3e-33
Identities = 27/39 (69%), Positives = 32/39 (81%)
Frame = -2
Query: 456 LSEQFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSYGT 340
LSE +PGL VYT ID +N KGFI+PGLGDAGDR++GT
Sbjct: 199 LSEAYPGLIVYTATIDEKLNSKGFIVPGLGDAGDRTFGT 237
>ref|NP_440088.1| uracil phosphoribosyltransferase [Synechocystis sp. PCC 6803]
gi|2499954|sp|P72753|UPP_SYNY3 Uracil
phosphoribosyltransferase (UMP pyrophosphorylase)
(UPRTase) gi|7427938|pir||S74616 uracil
phosphoribosyltransferase (EC 2.4.2.9) upp -
Synechocystis sp. (strain PCC 6803)
gi|1651841|dbj|BAA16768.1| uracil
phosphoribosyltransferase [Synechocystis sp. PCC 6803]
Length = 216
Score = 105 bits (262), Expect(2) = 2e-32
Identities = 52/96 (54%), Positives = 68/96 (70%)
Frame = -1
Query: 727 ALAEHASSILPATKTYHLGLSRDEETLQPTIYLNKLPDKFAEGSKVFVVDPMLATGGTIV 548
AL E A +LP K YHLGL R+E TL+P++YLNKLP++FA G+ + ++DPMLATG TI+
Sbjct: 88 ALVEGAQGLLPLAKIYHLGLVRNETTLEPSLYLNKLPERFAPGTHLLLLDPMLATGNTIM 147
Query: 547 AALNLLKDRGVGNKQIRVISAVAAPPALQNAERTVP 440
AAL+LL R + IR++S VAAP ALQ P
Sbjct: 148 AALDLLMARDIDANLIRLVSVVAAPTALQKLSNAHP 183
Score = 55.8 bits (133), Expect(2) = 2e-32
Identities = 23/39 (58%), Positives = 30/39 (75%)
Frame = -2
Query: 456 LSEQFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSYGT 340
LS P L +YT +ID +ND+G+I+PGLGDAGDR +GT
Sbjct: 178 LSNAHPNLTIYTAMIDEQLNDRGYIVPGLGDAGDRCFGT 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,937,504
Number of Sequences: 1393205
Number of extensions: 12914847
Number of successful extensions: 27200
Number of sequences better than 10.0: 328
Number of HSP's better than 10.0 without gapping: 26256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27092
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
