Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005053A_C01 KMC005053A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568937.1| peptide methionine sulfoxide reductase - like p... 101 9e-46
gb|AAK83645.1| AT4g25130/F13M23_270 [Arabidopsis thaliana] gi|24... 98 4e-42
sp|P54151|MSRA_BRANA Peptide methionine sulfoxide reductase (Pro... 101 7e-42
pir||T47215 protein-methionine-S-oxide reductase (EC 1.8.4.6) pr... 101 7e-42
pir||T52657 protein-methionine-S-oxide reductase (EC 1.8.4.6) ms... 94 4e-41
>ref|NP_568937.1| peptide methionine sulfoxide reductase - like protein; protein id:
At5g61640.1, supported by cDNA: 95135. [Arabidopsis
thaliana] gi|9758479|dbj|BAB09008.1| peptide methionine
sulfoxide reductase [Arabidopsis thaliana]
gi|29028812|gb|AAO64785.1| At5g61640 [Arabidopsis
thaliana]
Length = 202
Score = 101 bits (251), Expect(3) = 9e-46
Identities = 46/60 (76%), Positives = 56/60 (92%)
Frame = -1
Query: 562 RQGSDVGTQYRSGIYYYTPEQEKEAPESLEQQQKKLNRKIVTEILPAQKFYRAEEYHQQY 383
RQG+DVGTQYRSGIY+Y PEQEK A ESLE+ Q++++RK+VTEILPA+KFYRAEE+HQQY
Sbjct: 118 RQGNDVGTQYRSGIYFYNPEQEKLARESLERHQQQVDRKVVTEILPAKKFYRAEEHHQQY 177
Score = 74.3 bits (181), Expect(3) = 9e-46
Identities = 31/44 (70%), Positives = 37/44 (83%)
Frame = -3
Query: 674 GTTNHSEVVRVQYDPKDCSYGSLLDVFWARHDPTALNPAGE*CG 543
GTTNH+E+VRVQYDPK+CSY SLLD+FW++HDPT LN G G
Sbjct: 81 GTTNHAEIVRVQYDPKECSYQSLLDLFWSKHDPTTLNRQGNDVG 124
Score = 51.2 bits (121), Expect(3) = 9e-46
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 381 LEKGGRFGSKQSSSKGCNDPIRCYG 307
L KGGRFG KQS+ KGCNDPIRCYG
Sbjct: 178 LSKGGRFGLKQSTEKGCNDPIRCYG 202
>gb|AAK83645.1| AT4g25130/F13M23_270 [Arabidopsis thaliana]
gi|24111327|gb|AAN46787.1| At4g25130/F13M23_270
[Arabidopsis thaliana]
Length = 258
Score = 97.8 bits (242), Expect(3) = 4e-42
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = -1
Query: 562 RQGSDVGTQYRSGIYYYTPEQEKEAPESLEQQQKKLNRKIVTEILPAQKFYRAEEYHQQY 383
RQG DVGTQYRSGIYYYT EQ++ A E++E+QQK LN++IVTEILPA KFY+AE YHQQY
Sbjct: 174 RQGGDVGTQYRSGIYYYTDEQDRIAREAVEKQQKILNKRIVTEILPATKFYKAENYHQQY 233
Score = 71.6 bits (174), Expect(3) = 4e-42
Identities = 31/40 (77%), Positives = 34/40 (84%)
Frame = -3
Query: 674 GTTNHSEVVRVQYDPKDCSYGSLLDVFWARHDPTALNPAG 555
GTT H+EVVRVQYDPK+CS+ SLLDVFW RHDPT LN G
Sbjct: 137 GTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQG 176
Score = 45.1 bits (105), Expect(3) = 4e-42
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -2
Query: 381 LEKGGRFGSKQSSSKGCNDPIRCYG 307
L KGGR G +QS+ KGC DPIRCYG
Sbjct: 234 LAKGGRMGLRQSAEKGCKDPIRCYG 258
>sp|P54151|MSRA_BRANA Peptide methionine sulfoxide reductase (Protein-methionine-S-oxide
reductase) (Peptide Met(O) reductase)
gi|1076454|pir||S55365 protein-methionine-S-oxide
reductase (EC 1.8.4.6) - rape gi|853739|emb|CAA88538.1|
peptide methionine sulfoxide reductase [Brassica napus]
gi|1143406|emb|CAA63919.1| methionine sulfoxide
reductase [Brassica napus]
Length = 257
Score = 101 bits (251), Expect(3) = 7e-42
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = -1
Query: 562 RQGSDVGTQYRSGIYYYTPEQEKEAPESLEQQQKKLNRKIVTEILPAQKFYRAEEYHQQY 383
RQG+DVGT+YRSGIY+YT EQEK A E++E+QQK LNRKIVTEILPA KFYRAE YHQQY
Sbjct: 173 RQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQY 232
Score = 65.9 bits (159), Expect(3) = 7e-42
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -3
Query: 671 TTNHSEVVRVQYDPKDCSYGSLLDVFWARHDPTALNPAGE*CG 543
TT H+E+VRVQYDPK+ S+ SLLDVFW RHDPT LN G G
Sbjct: 137 TTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVG 179
Score = 46.6 bits (109), Expect(3) = 7e-42
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = -2
Query: 381 LEKGGRFGSKQSSSKGCNDPIRCYG 307
L KGGR G QS+ KGCNDPIRCYG
Sbjct: 233 LAKGGRMGLSQSAEKGCNDPIRCYG 257
>pir||T47215 protein-methionine-S-oxide reductase (EC 1.8.4.6) precursor,
chloroplast [validated] - rape
gi|1136793|emb|CAA62760.1| PMSR protein [Brassica napus]
Length = 257
Score = 101 bits (251), Expect(3) = 7e-42
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = -1
Query: 562 RQGSDVGTQYRSGIYYYTPEQEKEAPESLEQQQKKLNRKIVTEILPAQKFYRAEEYHQQY 383
RQG+DVGT+YRSGIY+YT EQEK A E++E+QQK LNRKIVTEILPA KFYRAE YHQQY
Sbjct: 173 RQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQY 232
Score = 65.9 bits (159), Expect(3) = 7e-42
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -3
Query: 671 TTNHSEVVRVQYDPKDCSYGSLLDVFWARHDPTALNPAGE*CG 543
TT H+E+VRVQYDPK+ S+ SLLDVFW RHDPT LN G G
Sbjct: 137 TTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVG 179
Score = 46.6 bits (109), Expect(3) = 7e-42
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = -2
Query: 381 LEKGGRFGSKQSSSKGCNDPIRCYG 307
L KGGR G QS+ KGCNDPIRCYG
Sbjct: 233 LAKGGRMGLSQSAEKGCNDPIRCYG 257
>pir||T52657 protein-methionine-S-oxide reductase (EC 1.8.4.6) msr [validated] -
Arabidopsis thaliana gi|4884033|emb|CAB43186.1| peptide
methionine sulfoxide reductase [Arabidopsis thaliana]
gi|4884035|emb|CAB43187.1| peptide methionine sulfoxide
reductase [Arabidopsis thaliana]
Length = 204
Score = 93.6 bits (231), Expect(3) = 4e-41
Identities = 46/62 (74%), Positives = 54/62 (86%), Gaps = 2/62 (3%)
Frame = -1
Query: 562 RQGSDVGTQYRSGIYYYTPEQEKEAPESLE--QQQKKLNRKIVTEILPAQKFYRAEEYHQ 389
RQ +DVGT YRSGIY+YTPEQEK A ESLE Q Q+++ RKI+TEILPA+KFYRAEE+HQ
Sbjct: 118 RQVNDVGTHYRSGIYFYTPEQEKLARESLERHQHQQQMERKIMTEILPAKKFYRAEEHHQ 177
Query: 388 QY 383
QY
Sbjct: 178 QY 179
Score = 67.8 bits (164), Expect(3) = 4e-41
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = -3
Query: 674 GTTNHSEVVRVQYDPKDCSYGSLLDVFWARHDPTALN 564
GTT HSEVVRVQYD DC+Y SLLD+FW+RHDPT LN
Sbjct: 81 GTTGHSEVVRVQYDLNDCTYESLLDLFWSRHDPTTLN 117
Score = 49.7 bits (117), Expect(3) = 4e-41
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -2
Query: 381 LEKGGRFGSKQSSSKGCNDPIRCYG 307
L KGGRFG QS++KGCNDPIRCYG
Sbjct: 180 LSKGGRFGQGQSTAKGCNDPIRCYG 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,226,220
Number of Sequences: 1393205
Number of extensions: 13077392
Number of successful extensions: 36067
Number of sequences better than 10.0: 262
Number of HSP's better than 10.0 without gapping: 34494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35899
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
