Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005050A_C01 KMC005050A_c01
(1054 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF06347.1|AF195654_1 SCUTL2 [Vitis vinifera] 260 1e-98
ref|NP_177640.1| thaumatin-like protein (PR-5); protein id: At1g... 251 1e-93
ref|NP_177642.1| thaumatin-like protein; protein id: At1g75050.1... 243 4e-92
gb|AAB71214.1| thaumatin-like protein [Arabidopsis thaliana] 251 5e-92
ref|NP_177641.1| thaumatin-like protein; protein id: At1g75040.1... 234 1e-83
>gb|AAF06347.1|AF195654_1 SCUTL2 [Vitis vinifera]
Length = 243
Score = 260 bits (665), Expect(2) = 1e-98
Identities = 122/171 (71%), Positives = 141/171 (82%)
Frame = -1
Query: 958 LLLLLGNVASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGASVQVTAPSGWSG 779
LL L+ + SAT+FTLENHC+YT+WPGTLSGNGAA+LG+GGF L PGAS+Q+ AP GWSG
Sbjct: 12 LLCLVVSTVSATVFTLENHCSYTIWPGTLSGNGAALLGNGGFVLPPGASIQLQAPFGWSG 71
Query: 778 RFWARTGCNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTASNGNKDFYDVSLV 599
RFWARTGCNFD G G C TGDC G L C GGGVPPV+LAEFTIG A + +KDFYDVSLV
Sbjct: 72 RFWARTGCNFDSAGKGTCITGDC-GALNCIGGGVPPVSLAEFTIG-ADSADKDFYDVSLV 129
Query: 598 DGYNVGMGVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVACKT 446
DGYNVGM + ++GGTGDCQ AGCVADLN +CPAELQ+ +G VVACK+
Sbjct: 130 DGYNVGMSIESSGGTGDCQRAGCVADLNSNCPAELQI---TDSGSVVACKS 177
Score = 122 bits (307), Expect(2) = 1e-98
Identities = 50/65 (76%), Positives = 58/65 (88%)
Frame = -2
Query: 450 RRACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGSDYS 271
+ ACAAFNT ++CCTG+H+TP TCSPT YSEIFK ACPTAYSYAYDD TSTCTC+G++Y
Sbjct: 176 KSACAAFNTAQYCCTGDHSTPQTCSPTQYSEIFKKACPTAYSYAYDDPTSTCTCTGANYL 235
Query: 270 ITFCP 256
ITFCP
Sbjct: 236 ITFCP 240
>ref|NP_177640.1| thaumatin-like protein (PR-5); protein id: At1g75030.1, supported
by cDNA: gi_2435405 [Arabidopsis thaliana]
gi|25296200|pir||C96780 thaumatin-like protein,
28949-28112 [imported] - Arabidopsis thaliana
gi|12323901|gb|AAG51927.1|AC013258_21 thaumatin-like
protein; 28949-28112 [Arabidopsis thaliana]
Length = 246
Score = 251 bits (640), Expect(2) = 1e-93
Identities = 117/179 (65%), Positives = 139/179 (77%)
Frame = -1
Query: 982 SKAFFIFHLLLLLGNVASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGASVQV 803
S +F + + G SAT+FTL+N C YTVWPGTLSGN + LGDGGF L PGASVQ+
Sbjct: 5 SSIHILFFVFITSGIADSATVFTLQNSCAYTVWPGTLSGN-SITLGDGGFPLTPGASVQL 63
Query: 802 TAPSGWSGRFWARTGCNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTASNGNK 623
TAP+GWSGRFWARTGCNFD +G+G C TGDC G LKCTGGGVPP TLAEFT+G +SN
Sbjct: 64 TAPTGWSGRFWARTGCNFDASGHGTCVTGDCGGVLKCTGGGVPPATLAEFTVG-SSNAGM 122
Query: 622 DFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVACKT 446
DFYDVSLVDGYNV MG++ GG G+C+YAGCV+D+N CP+EL++ NS G V ACK+
Sbjct: 123 DFYDVSLVDGYNVKMGIKPQGGFGNCKYAGCVSDINEICPSELRIMDPNS-GSVAACKS 180
Score = 115 bits (289), Expect(2) = 1e-93
Identities = 49/68 (72%), Positives = 59/68 (86%)
Frame = -2
Query: 450 RRACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGSDYS 271
+ ACAAF++ EFCCTG HATP TCSPT+YS +FK+ACP+AYSYAYDDA+ST TC+GS+Y
Sbjct: 179 KSACAAFSSPEFCCTGAHATPQTCSPTYYSSMFKNACPSAYSYAYDDASSTFTCTGSNYL 238
Query: 270 ITFCPNGS 247
ITFCP S
Sbjct: 239 ITFCPTQS 246
>ref|NP_177642.1| thaumatin-like protein; protein id: At1g75050.1 [Arabidopsis
thaliana] gi|25296201|pir||E96780 thaumatin-like
protein, 23251-22305 [imported] - Arabidopsis thaliana
gi|12323893|gb|AAG51919.1|AC013258_13 thaumatin-like
protein; 23251-22305 [Arabidopsis thaliana]
Length = 257
Score = 243 bits (619), Expect(2) = 4e-92
Identities = 113/164 (68%), Positives = 132/164 (79%)
Frame = -1
Query: 937 VASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGASVQVTAPSGWSGRFWARTG 758
V++AT+FTL+N C YTVWPG LSGN LGDGGF L PGASVQ+TAP+GWSGRFWARTG
Sbjct: 32 VSAATVFTLQNSCPYTVWPGILSGNDNT-LGDGGFPLTPGASVQLTAPAGWSGRFWARTG 90
Query: 757 CNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTASNGNKDFYDVSLVDGYNVGM 578
CNFD +G+GNC TGDC G LKC GGGVPPVTLAEFT+ +G KDFYDVSLVDGYNV M
Sbjct: 91 CNFDASGHGNCGTGDCGGVLKCNGGGVPPVTLAEFTL--VGDGGKDFYDVSLVDGYNVEM 148
Query: 577 GVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVACKT 446
G++ GG+GDC YAGCVAD+N CP EL++ + TG + ACK+
Sbjct: 149 GIKPQGGSGDCHYAGCVADVNAVCPNELRLM-DPHTGIIAACKS 191
Score = 119 bits (297), Expect(2) = 4e-92
Identities = 51/65 (78%), Positives = 57/65 (87%)
Frame = -2
Query: 450 RRACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGSDYS 271
+ ACAAFN+ EFCCTG HATP TCSPTHYS +FKSACP AYSYAYDDATST TC+GS+Y
Sbjct: 190 KSACAAFNSEEFCCTGAHATPQTCSPTHYSAMFKSACPGAYSYAYDDATSTFTCTGSNYL 249
Query: 270 ITFCP 256
I+FCP
Sbjct: 250 ISFCP 254
>gb|AAB71214.1| thaumatin-like protein [Arabidopsis thaliana]
Length = 245
Score = 251 bits (640), Expect(2) = 5e-92
Identities = 117/179 (65%), Positives = 139/179 (77%)
Frame = -1
Query: 982 SKAFFIFHLLLLLGNVASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGASVQV 803
S +F + + G SAT+FTL+N C YTVWPGTLSGN + LGDGGF L PGASVQ+
Sbjct: 5 SSIHILFFVFITSGIADSATVFTLQNSCAYTVWPGTLSGN-SITLGDGGFPLTPGASVQL 63
Query: 802 TAPSGWSGRFWARTGCNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTASNGNK 623
TAP+GWSGRFWARTGCNFD +G+G C TGDC G LKCTGGGVPP TLAEFT+G +SN
Sbjct: 64 TAPTGWSGRFWARTGCNFDASGHGTCVTGDCGGVLKCTGGGVPPATLAEFTVG-SSNAGM 122
Query: 622 DFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVACKT 446
DFYDVSLVDGYNV MG++ GG G+C+YAGCV+D+N CP+EL++ NS G V ACK+
Sbjct: 123 DFYDVSLVDGYNVKMGIKPQGGFGNCKYAGCVSDINEICPSELRIMDPNS-GSVAACKS 180
Score = 110 bits (275), Expect(2) = 5e-92
Identities = 47/69 (68%), Positives = 58/69 (83%)
Frame = -2
Query: 453 ARRACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGSDY 274
A ++ AF++ EFCCTG HATP TCSPT+YS +FK+ACP+AYSYAYDDA+ST TC+GS+Y
Sbjct: 177 ACKSACAFSSPEFCCTGAHATPQTCSPTYYSSMFKNACPSAYSYAYDDASSTFTCTGSNY 236
Query: 273 SITFCPNGS 247
ITFCP S
Sbjct: 237 LITFCPTQS 245
>ref|NP_177641.1| thaumatin-like protein; protein id: At1g75040.1, supported by cDNA:
gi_14334527, supported by cDNA: gi_1448918, supported by
cDNA: gi_16323451, supported by cDNA: gi_166864
[Arabidopsis thaliana] gi|135915|sp|P28493|PR5_ARATH
Pathogenesis-related protein 5 precursor (PR-5)
gi|322559|pir||JQ1695 pathogenesis-related protein 5
precursor - Arabidopsis thaliana
gi|166865|gb|AAA32865.1| thaumatin-like protein
gi|1448919|gb|AAB68336.1| thaumatin-like protein
[Arabidopsis thaliana]
gi|12323897|gb|AAG51923.1|AC013258_17 thaumatin-like
protein; 25613-24636 [Arabidopsis thaliana]
gi|14334528|gb|AAK59672.1| putative thaumatin protein
[Arabidopsis thaliana] gi|16323452|gb|AAL15220.1|
putative thaumatin protein [Arabidopsis thaliana]
Length = 239
Score = 234 bits (597), Expect(2) = 1e-83
Identities = 113/179 (63%), Positives = 135/179 (75%)
Frame = -1
Query: 982 SKAFFIFHLLLLLGNVASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGASVQV 803
S +F + + G AT FTL N+C TVW GTL+G G LGDGGF L PGAS Q+
Sbjct: 5 SSIHILFLVFITSGIAVMATDFTLRNNCPTTVWAGTLAGQGPK-LGDGGFELTPGASRQL 63
Query: 802 TAPSGWSGRFWARTGCNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTASNGNK 623
TAP+GWSGRFWARTGCNFD +GNG C TGDC GGL+C GGGVPPVTLAEFT+ +G K
Sbjct: 64 TAPAGWSGRFWARTGCNFDASGNGRCVTGDC-GGLRCNGGGVPPVTLAEFTL--VGDGGK 120
Query: 622 DFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVACKT 446
DFYDVSLVDGYNV +G+R +GG+GDC+YAGCV+DLN +CP L+V +N+ VVACK+
Sbjct: 121 DFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNN---VVACKS 176
Score = 99.4 bits (246), Expect(2) = 1e-83
Identities = 41/65 (63%), Positives = 49/65 (75%)
Frame = -2
Query: 450 RRACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGSDYS 271
+ AC FNT ++CC G + P TC PT YS IFK+ACP AYSYAYDD TST TC+G++Y
Sbjct: 175 KSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANYE 234
Query: 270 ITFCP 256
ITFCP
Sbjct: 235 ITFCP 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 962,039,137
Number of Sequences: 1393205
Number of extensions: 24753870
Number of successful extensions: 117811
Number of sequences better than 10.0: 1242
Number of HSP's better than 10.0 without gapping: 85508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110153
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 62360592902
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
