Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005049A_C01 KMC005049A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197875.1| CONSTANS B-box zinc finger family protein; prot... 133 1e-30
gb|AAC99309.1| CONSTANS-like protein 1 [Malus x domestica] 129 1e-29
gb|AAC99310.1| CONSTANS-like protein 2 [Malus x domestica] 120 1e-26
gb|AAD22518.1|AF001136_1 zinc finger protein [Pinus radiata] 118 4e-26
pir||T08125 CONSTANS protein homolog COL1 - radish gi|3341723|gb... 115 2e-25
>ref|NP_197875.1| CONSTANS B-box zinc finger family protein; protein id: At5g24930.1,
supported by cDNA: gi_15450658 [Arabidopsis thaliana]
Length = 362
Score = 133 bits (334), Expect = 1e-30
Identities = 72/116 (62%), Positives = 90/116 (77%), Gaps = 8/116 (6%)
Frame = -3
Query: 468 HAVSSPSMEVGVVPDGNAMSEISYCCYGTPAPA------VEAVQFSAADREARVLRYREK 307
H+VSS SMEVGVVPDG +++++SY YG PA + AV ++A+REARV+RYREK
Sbjct: 247 HSVSSSSMEVGVVPDGGSVADVSYP-YGGPATSGADPGTQRAVPLTSAEREARVMRYREK 305
Query: 306 RKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDVNV--NLLTEEDPFSGYGVVPT 145
RKNR+FEKTIRYASRKAYAE RPRIKGRFAKR+D N +++ FSG+G+VPT
Sbjct: 306 RKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGIFSGFGLVPT 361
>gb|AAC99309.1| CONSTANS-like protein 1 [Malus x domestica]
Length = 340
Score = 129 bits (325), Expect = 1e-29
Identities = 71/111 (63%), Positives = 85/111 (75%), Gaps = 4/111 (3%)
Frame = -3
Query: 465 AVSSPSMEVGVVPDGNAMSEISYCCYGTPAPAVE----AVQFSAADREARVLRYREKRKN 298
+VSS SM+V +VPD NAM++ S + AVE AVQ S+ADREARVLRYREKRKN
Sbjct: 233 SVSSSSMDVSIVPDDNAMTDDSNPYNKSMTSAVESSHPAVQLSSADREARVLRYREKRKN 292
Query: 297 RRFEKTIRYASRKAYAETRPRIKGRFAKRSDVNVNLLTEEDPFSGYGVVPT 145
R+FEKTIRYASRKAYAETRPRIKGRFAKR++V + E +P YG+VP+
Sbjct: 293 RKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEI----EAEPMCRYGIVPS 339
>gb|AAC99310.1| CONSTANS-like protein 2 [Malus x domestica]
Length = 329
Score = 120 bits (300), Expect = 1e-26
Identities = 68/114 (59%), Positives = 82/114 (71%)
Frame = -3
Query: 486 NAKSHYHAVSSPSMEVGVVPDGNAMSEISYCCYGTPAPAVEAVQFSAADREARVLRYREK 307
+A+ +VSS SM++ VVPDGNA++ T PAV Q S+ DR ARVLRYREK
Sbjct: 226 HARCLSQSVSSSSMDISVVPDGNAVT----AAVETSQPAV---QLSSVDRVARVLRYREK 278
Query: 306 RKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDVNVNLLTEEDPFSGYGVVPT 145
RKNR+FEKTIRYASRKAYAETRPRIKGRFAKR++V + E + YGVVP+
Sbjct: 279 RKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEI----EAERMCRYGVVPS 328
>gb|AAD22518.1|AF001136_1 zinc finger protein [Pinus radiata]
Length = 438
Score = 118 bits (295), Expect = 4e-26
Identities = 69/118 (58%), Positives = 77/118 (64%), Gaps = 10/118 (8%)
Frame = -3
Query: 468 HAVSSPSMEVGVVPDGNAMSEISYCCYGTPAPAVEAV--------QFSAADREARVLRYR 313
H VSS ++VG+VPD N S+IS Y P E Q REARVLRYR
Sbjct: 321 HCVSSSPIDVGIVPDSNITSDIS-TPYHDPRGVFEIPPRVVHPGGQGEVMGREARVLRYR 379
Query: 312 EKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDVNVNLLTEED--PFSGYGVVPT 145
EKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKR++V V + P GYGVVP+
Sbjct: 380 EKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTEVEVEQIYSSSLLPDQGYGVVPS 437
>pir||T08125 CONSTANS protein homolog COL1 - radish gi|3341723|gb|AAC35496.1|
CONSTANS-like 1 protein [Raphanus sativus]
Length = 307
Score = 115 bits (289), Expect = 2e-25
Identities = 66/107 (61%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
Frame = -3
Query: 462 VSSPSMEVGVVPDGNAMSEISYCCYGTPAPAVEAVQFSAADREARVLRYREKRKNRRFEK 283
VSS S+EV +VP+G A+ T A AVQ S A+REARVLRYREKRKNR+FEK
Sbjct: 209 VSSTSLEVPLVPEGGAV---------TTTNATPAVQLSPAEREARVLRYREKRKNRKFEK 259
Query: 282 TIRYASRKAYAETRPRIKGRFAKRSDVNVN-LLTEEDPFSGYGVVPT 145
TIRYASRKAYAE RPRIKGRFAKR+D VN + + G+GVVP+
Sbjct: 260 TIRYASRKAYAEVRPRIKGRFAKRTDSRVNDGGGDVGVYGGFGVVPS 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,573,368
Number of Sequences: 1393205
Number of extensions: 11474079
Number of successful extensions: 153068
Number of sequences better than 10.0: 1492
Number of HSP's better than 10.0 without gapping: 65497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121644
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
