Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005043A_C01 KMC005043A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198801.1| 40S ribosomal protein S9-like; protein id: At5g... 180 6e-48
ref|NP_197024.1| 40S ribosomal protein - like; protein id: At5g1... 178 8e-45
dbj|BAA78592.1| 40S ribosomal protein S9 [Chlamydomonas sp. HS-5] 161 4e-39
ref|NP_524004.2| Ribosomal protein S9 CG3395-PA gi|24661711|ref|... 159 3e-38
sp|P52810|RS9_PODAN 40S ribosomal protein S9 (S7) gi|1321917|emb... 158 4e-38
>ref|NP_198801.1| 40S ribosomal protein S9-like; protein id: At5g39850.1, supported
by cDNA: 41408. [Arabidopsis thaliana]
gi|10176977|dbj|BAB10209.1| 40S ribosomal protein S9
[Arabidopsis thaliana] gi|21593688|gb|AAM65655.1| 40S
ribosomal protein S9-like [Arabidopsis thaliana]
Length = 197
Score = 180 bits (456), Expect(2) = 6e-48
Identities = 87/94 (92%), Positives = 93/94 (98%)
Frame = -3
Query: 581 YGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVN 402
YGLLDETQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQ+VN
Sbjct: 85 YGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVN 144
Query: 401 IPSFMVRMDSQKHIDFSLTSPLGGGRPGRVKRKN 300
IPSFMVR++SQKH+DFSLTSP GGGRPGRVKR+N
Sbjct: 145 IPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178
Score = 32.7 bits (73), Expect(2) = 6e-48
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -1
Query: 292 AAAKKAAGGDGDEEDED 242
A AKKA+GGDGDE+DE+
Sbjct: 181 AGAKKASGGDGDEDDEE 197
>ref|NP_197024.1| 40S ribosomal protein - like; protein id: At5g15200.1 [Arabidopsis
thaliana] gi|11276530|pir||T49955 40S ribosomal
protein-like - Arabidopsis thaliana
gi|7671489|emb|CAB89330.1| 40S ribosomal protein-like
[Arabidopsis thaliana]
Length = 198
Score = 178 bits (452), Expect(2) = 8e-45
Identities = 86/96 (89%), Positives = 94/96 (97%)
Frame = -3
Query: 581 YGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVN 402
YGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+Q+VN
Sbjct: 85 YGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVN 144
Query: 401 IPSFMVRMDSQKHIDFSLTSPLGGGRPGRVKRKNMK 294
IPSFMVR+DSQKHIDF+LTSP GGGRPGRVKR+N K
Sbjct: 145 IPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180
Score = 23.9 bits (50), Expect(2) = 8e-45
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 295 SAAAKKAAGGDGDEEDED 242
SA+ K + GGD D +DE+
Sbjct: 181 SASKKASGGGDADGDDEE 198
>dbj|BAA78592.1| 40S ribosomal protein S9 [Chlamydomonas sp. HS-5]
Length = 192
Score = 161 bits (407), Expect(2) = 4e-39
Identities = 77/94 (81%), Positives = 87/94 (91%)
Frame = -3
Query: 581 YGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVN 402
YGLL+ETQ+KLDYVLAL +FLERRLQT+VFK G+AKSIHHARVLI+Q HIRVG+QVVN
Sbjct: 85 YGLLNETQDKLDYVLALQPNDFLERRLQTVVFKQGLAKSIHHARVLIKQNHIRVGKQVVN 144
Query: 401 IPSFMVRMDSQKHIDFSLTSPLGGGRPGRVKRKN 300
IPSFMVR+DSQKH+DF+LTSP GGGRPGR KRKN
Sbjct: 145 IPSFMVRVDSQKHVDFALTSPFGGGRPGRCKRKN 178
Score = 21.9 bits (45), Expect(2) = 4e-39
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 286 AKKAAGGDGDEEDE 245
A K AGG G E+DE
Sbjct: 179 AGKGAGGGGGEDDE 192
>ref|NP_524004.2| Ribosomal protein S9 CG3395-PA gi|24661711|ref|NP_729506.1|
Ribosomal protein S9 CG3395-PD gi|7294919|gb|AAF50249.1|
CG3395-PA [Drosophila melanogaster]
gi|23093773|gb|AAN11946.1| CG3395-PD [Drosophila
melanogaster]
Length = 195
Score = 159 bits (401), Expect = 3e-38
Identities = 77/96 (80%), Positives = 88/96 (91%)
Frame = -3
Query: 578 GLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNI 399
G+LDE++ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +QVVNI
Sbjct: 86 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNI 145
Query: 398 PSFMVRMDSQKHIDFSLTSPLGGGRPGRVKRKNMKR 291
PSF+VR+DSQKHIDFSL SP GGGRPGRVKRKN+K+
Sbjct: 146 PSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKK 181
>sp|P52810|RS9_PODAN 40S ribosomal protein S9 (S7) gi|1321917|emb|CAA65433.1|
cytoplasmic ribosomal protein S7 [Podospora anserina]
Length = 190
Score = 158 bits (400), Expect = 4e-38
Identities = 75/95 (78%), Positives = 88/95 (91%)
Frame = -3
Query: 578 GLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNI 399
G+LDE++ KLDYVLAL E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+
Sbjct: 82 GVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNV 141
Query: 398 PSFMVRMDSQKHIDFSLTSPLGGGRPGRVKRKNMK 294
PSF+VR+DSQKHIDF+LTSP GGGRPGRV+RK K
Sbjct: 142 PSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKKAK 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,480,304
Number of Sequences: 1393205
Number of extensions: 10872985
Number of successful extensions: 33779
Number of sequences better than 10.0: 1098
Number of HSP's better than 10.0 without gapping: 32237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33704
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
