Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005036A_C03 KMC005036A_c03
(672 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11);... 76 4e-13
gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana] 76 5e-13
gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thalian... 62 6e-10
gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populu... 64 1e-09
gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana] 62 5e-09
>ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11); protein id:
At5g03170.1, supported by cDNA: 14950., supported by
cDNA: gi_13430541 [Arabidopsis thaliana]
gi|11281995|pir||T48338 arabinogalactan protein-like -
Arabidopsis thaliana gi|7413594|emb|CAB86084.1|
arabinogalactan protein-like [Arabidopsis thaliana]
gi|9757768|dbj|BAB08377.1| contains similarity to
arabinogalactan protein~gene_id:MOK16.8 [Arabidopsis
thaliana] gi|13430542|gb|AAK25893.1|AF360183_1 putative
arabinogalactan protein [Arabidopsis thaliana]
gi|14532750|gb|AAK64076.1| putative arabinogalactan
protein [Arabidopsis thaliana]
Length = 246
Score = 76.3 bits (186), Expect = 4e-13
Identities = 50/105 (47%), Positives = 63/105 (59%), Gaps = 18/105 (17%)
Frame = -3
Query: 670 TSGYQVHITTGVVETTVSHTIYSDKTLAVYQVEKVLLPLALFGP--APTPAPARG----- 512
+SG QV+ITTGVV TV++++YSDK LAVYQV++VLLPLA+FG AP PAP +G
Sbjct: 144 SSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSSVAPAPAPEKGGSVSK 203
Query: 511 ---SGADPAGDKC-------PGF*FSIWV-VVGCIR*LRSTSAWV 410
SG D GD GF F I + V I S+S W+
Sbjct: 204 GSASGGDDGGDSTDSSDAERTGFGFGIRITTVAAI--AASSSLWI 246
>gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 246
Score = 75.9 bits (185), Expect = 5e-13
Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 10/71 (14%)
Frame = -3
Query: 670 TSGYQVHITTGVVETTVSHTIYSDKTLAVYQVEKVLLPLALFGP--APTPAPARG----- 512
+SG QV+ITTGVV TV++++YSDK LAVYQV++VLLPLA+FG AP PAP +G
Sbjct: 144 SSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSSVAPAPAPEKGGSVSK 203
Query: 511 ---SGADPAGD 488
SG D GD
Sbjct: 204 GSASGGDDGGD 214
>gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thaliana]
gi|23308259|gb|AAN18099.1| At5g60490/muf9_140
[Arabidopsis thaliana]
Length = 239
Score = 62.4 bits (150), Expect(2) = 6e-10
Identities = 33/51 (64%), Positives = 38/51 (73%)
Frame = -3
Query: 670 TSGYQVHITTGVVETTVSHTIYSDKTLAVYQVEKVLLPLALFGPAPTPAPA 518
TSG V+IT+GV TTVS +YSD LAVYQV+KVLLP +F P P PAPA
Sbjct: 146 TSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRP-PAPA 195
Score = 23.1 bits (48), Expect(2) = 6e-10
Identities = 17/56 (30%), Positives = 23/56 (40%)
Frame = -1
Query: 522 RREAPAPTQPETNVRASDSPSGSSSDASVDYVPRPRGCHVSPTLVPLLLPLLVSCL 355
R APAP + + S SSSD SP ++ LL +LV C+
Sbjct: 190 RPPAPAPAPSVSKSKKKKDDSDSSSDD-------------SPAMLRLLCVMLVLCV 232
>gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populus x canescens]
Length = 240
Score = 64.3 bits (155), Expect = 1e-09
Identities = 33/52 (63%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Frame = -3
Query: 670 TSGYQVHITTGVVETTVSHTIYSDKTLAVYQVEKVLLPLALFGP-APTPAPA 518
T+G V+ITTG+ T+VS TIY+D LAV+QV+KVLLPL +F P PTPAPA
Sbjct: 143 TTGNSVNITTGLTNTSVSGTIYTDNQLAVHQVDKVLLPLDIFTPKPPTPAPA 194
>gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 248
Score = 62.4 bits (150), Expect = 5e-09
Identities = 33/51 (64%), Positives = 38/51 (73%)
Frame = -3
Query: 670 TSGYQVHITTGVVETTVSHTIYSDKTLAVYQVEKVLLPLALFGPAPTPAPA 518
TSG V+IT+GV TTVS +YSD LAVYQV+KVLLP +F P P PAPA
Sbjct: 145 TSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRP-PAPA 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 664,536,326
Number of Sequences: 1393205
Number of extensions: 17196985
Number of successful extensions: 81416
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 65912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79920
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
