Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005029A_C01 KMC005029A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52377 pRIB5 protein [imported] - Ribes nigrum (fragment) g... 155 8e-37
gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana] 138 8e-32
ref|NP_191604.1| putative protein; protein id: At3g60450.1, supp... 138 8e-32
ref|NP_191603.1| putative protein; protein id: At3g60440.1 [Arab... 120 2e-26
ref|NP_191602.1| putative protein; protein id: At3g60430.1 [Arab... 105 9e-22
>pir||T52377 pRIB5 protein [imported] - Ribes nigrum (fragment)
gi|3378491|emb|CAA07566.1| pRIB5 protein [Ribes nigrum]
Length = 258
Score = 155 bits (391), Expect = 8e-37
Identities = 75/125 (60%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Frame = -2
Query: 758 WGFDIAEREAMLPAGTVDRNVQRIYKELPKWEEPHSRTKARYEQIVTDLADKHPTENLLL 579
WGFD + E+ P GTVD +V+ +YKE+PKWEE + +ARYE+++ LADK+PTENLLL
Sbjct: 133 WGFDKSHLESTFPVGTVDHSVEPLYKEMPKWEETVNGARARYEEVIQALADKYPTENLLL 192
Query: 578 VTHGEGVGTALSSFQKGTLVYEVMYCGYVELRRPI-FKKNQSFTAGEFEVLTNNGQTGVS 402
VTHGEGVG A+S+F K VYE YC Y RR I KNQSFTA FEVL GQTGVS
Sbjct: 193 VTHGEGVGVAVSAFMKDVTVYEADYCAYTHARRSIVLGKNQSFTAENFEVLPKQGQTGVS 252
Query: 401 YSIEQ 387
Y +EQ
Sbjct: 253 YVLEQ 257
>gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana]
Length = 274
Score = 138 bits (348), Expect = 8e-32
Identities = 65/124 (52%), Positives = 87/124 (69%)
Frame = -2
Query: 752 FDIAEREAMLPAGTVDRNVQRIYKELPKWEEPHSRTKARYEQIVTDLADKHPTENLLLVT 573
F +++ E M P G VD NV +YKELPKWEE + RY ++V LADK+P ENLLLVT
Sbjct: 141 FTVSDIETMFPEGMVDHNVDMVYKELPKWEESVEGCRDRYVKVVKALADKYPEENLLLVT 200
Query: 572 HGEGVGTALSSFQKGTLVYEVMYCGYVELRRPIFKKNQSFTAGEFEVLTNNGQTGVSYSI 393
HGEGVGT S+F K T VYEV YC YVE+RR + ++ S AG++EV+ ++GQ G+ +S
Sbjct: 201 HGEGVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGDYEVVLSHGQAGIRFSH 260
Query: 392 EQLS 381
+ +S
Sbjct: 261 DPVS 264
>ref|NP_191604.1| putative protein; protein id: At3g60450.1, supported by cDNA:
15792. [Arabidopsis thaliana] gi|11281606|pir||T47856
hypothetical protein T8B10.110 - Arabidopsis thaliana
gi|7287993|emb|CAB81831.1| putative protein [Arabidopsis
thaliana]
Length = 274
Score = 138 bits (348), Expect = 8e-32
Identities = 65/124 (52%), Positives = 87/124 (69%)
Frame = -2
Query: 752 FDIAEREAMLPAGTVDRNVQRIYKELPKWEEPHSRTKARYEQIVTDLADKHPTENLLLVT 573
F +++ E M P G VD NV +YKELPKWEE + RY ++V LADK+P ENLLLVT
Sbjct: 141 FTVSDIETMFPEGMVDHNVDMVYKELPKWEESVEGCRDRYVKVVKALADKYPEENLLLVT 200
Query: 572 HGEGVGTALSSFQKGTLVYEVMYCGYVELRRPIFKKNQSFTAGEFEVLTNNGQTGVSYSI 393
HGEGVGT S+F K T VYEV YC YVE+RR + ++ S AG++EV+ ++GQ G+ +S
Sbjct: 201 HGEGVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGDYEVVLSHGQAGIRFSH 260
Query: 392 EQLS 381
+ +S
Sbjct: 261 DPVS 264
>ref|NP_191603.1| putative protein; protein id: At3g60440.1 [Arabidopsis thaliana]
gi|11281607|pir||T47855 hypothetical protein T8B10.100 -
Arabidopsis thaliana gi|7287992|emb|CAB81830.1| putative
protein [Arabidopsis thaliana]
gi|28392891|gb|AAO41882.1| unknown protein [Arabidopsis
thaliana]
Length = 268
Score = 120 bits (302), Expect = 2e-26
Identities = 61/126 (48%), Positives = 83/126 (65%)
Frame = -2
Query: 752 FDIAEREAMLPAGTVDRNVQRIYKELPKWEEPHSRTKARYEQIVTDLADKHPTENLLLVT 573
F I+E EA+ P G VD +V +YKE+P+WEE R+ ++ LADK+P+ENLLLVT
Sbjct: 141 FMISELEAIFPDGMVDHSVDPVYKEMPQWEETVEGCTDRFLSLIKTLADKYPSENLLLVT 200
Query: 572 HGEGVGTALSSFQKGTLVYEVMYCGYVELRRPIFKKNQSFTAGEFEVLTNNGQTGVSYSI 393
HGEGV T ++F KG VY+V YCG ELRR + K+ S AG+FEV+T+ Q G+ Y
Sbjct: 201 HGEGVRTTFATF-KGVHVYDVEYCGCAELRRQVSSKDGSTKAGDFEVITSLSQCGIKYHS 259
Query: 392 EQLSEQ 375
++Q
Sbjct: 260 LSTTDQ 265
>ref|NP_191602.1| putative protein; protein id: At3g60430.1 [Arabidopsis thaliana]
gi|11281608|pir||T47854 hypothetical protein T8B10.90 -
Arabidopsis thaliana gi|7287991|emb|CAB81829.1| putative
protein [Arabidopsis thaliana]
Length = 258
Score = 105 bits (261), Expect = 9e-22
Identities = 56/118 (47%), Positives = 73/118 (61%)
Frame = -2
Query: 752 FDIAEREAMLPAGTVDRNVQRIYKELPKWEEPHSRTKARYEQIVTDLADKHPTENLLLVT 573
F I+E EAM P G VD NV +YKE+P+WEE RY +V LADK+P ENLLLVT
Sbjct: 140 FKISELEAMFPDGMVDHNVDPVYKEMPQWEETLESCNNRYVNLVKTLADKYPCENLLLVT 199
Query: 572 HGEGVGTALSSFQKGTLVYEVMYCGYVELRRPIFKKNQSFTAGEFEVLTNNGQTGVSY 399
H EGV ++F K + + +C VEL+R I S G+FEV+T++GQ G+ Y
Sbjct: 200 HREGVSFTYATFYK-EATHRLDFCACVELQRQI----SSSEVGDFEVVTSHGQDGIMY 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,420,067
Number of Sequences: 1393205
Number of extensions: 12859493
Number of successful extensions: 29111
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 28378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29103
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
