Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005026A_C01 KMC005026A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567672.1| putative protein; protein id: At4g22890.1, supp... 198 4e-50
pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana... 198 4e-50
dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|289508... 190 1e-47
ref|NP_192933.1| putative protein; protein id: At4g11960.1 [Arab... 190 1e-47
ref|NP_342523.1| SSU ribosomal protein S27E (rps27E) [Sulfolobus... 36 0.45
>ref|NP_567672.1| putative protein; protein id: At4g22890.1, supported by cDNA:
13264., supported by cDNA: gi_15292940 [Arabidopsis
thaliana] gi|24030260|gb|AAN41305.1| unknown protein
[Arabidopsis thaliana]
Length = 324
Score = 198 bits (504), Expect = 4e-50
Identities = 91/110 (82%), Positives = 104/110 (93%)
Frame = -3
Query: 605 MFFFLDDLTGFEITYLLELPEPFSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPN 426
+FFFLDD+TGFEITY++ELPEP+SFIFTWFAAVP+IV+LAL+IT +IIKDFLILKGPCPN
Sbjct: 215 LFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPN 274
Query: 425 CGTENTSFFGTILSIASGGSSNKVKCSNCGTEMVYDSATRLITLPEGSNA 276
CGTENTSFFGTILSI+SGG +N VKC+NCGT MVYDS +RLITLPEGS A
Sbjct: 275 CGTENTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324
>pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana
gi|3292814|emb|CAA19804.1| putative protein [Arabidopsis
thaliana] gi|7269136|emb|CAB79244.1| putative protein
[Arabidopsis thaliana]
Length = 340
Score = 198 bits (504), Expect = 4e-50
Identities = 91/110 (82%), Positives = 104/110 (93%)
Frame = -3
Query: 605 MFFFLDDLTGFEITYLLELPEPFSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPN 426
+FFFLDD+TGFEITY++ELPEP+SFIFTWFAAVP+IV+LAL+IT +IIKDFLILKGPCPN
Sbjct: 231 LFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPN 290
Query: 425 CGTENTSFFGTILSIASGGSSNKVKCSNCGTEMVYDSATRLITLPEGSNA 276
CGTENTSFFGTILSI+SGG +N VKC+NCGT MVYDS +RLITLPEGS A
Sbjct: 291 CGTENTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 340
>dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|28950891|gb|AAO63369.1|
At4g11960 [Arabidopsis thaliana]
Length = 313
Score = 190 bits (483), Expect = 1e-47
Identities = 88/110 (80%), Positives = 99/110 (90%)
Frame = -3
Query: 605 MFFFLDDLTGFEITYLLELPEPFSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPN 426
+FFFLDD+TGFEITYLLELPEPFSFIFTWFAAVP IV+LAL++T +I+KDFLILKGPCPN
Sbjct: 204 LFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPN 263
Query: 425 CGTENTSFFGTILSIASGGSSNKVKCSNCGTEMVYDSATRLITLPEGSNA 276
CGTEN SFFGTILSI + ++N VKCS CGTEMVYDS +RLITLPEG A
Sbjct: 264 CGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVYDSGSRLITLPEGGKA 313
>ref|NP_192933.1| putative protein; protein id: At4g11960.1 [Arabidopsis thaliana]
gi|7485578|pir||T06603 hypothetical protein F16J13.30 -
Arabidopsis thaliana gi|4586101|emb|CAB40937.1| putative
protein [Arabidopsis thaliana]
gi|7267897|emb|CAB78239.1| putative protein [Arabidopsis
thaliana]
Length = 338
Score = 190 bits (483), Expect = 1e-47
Identities = 88/110 (80%), Positives = 99/110 (90%)
Frame = -3
Query: 605 MFFFLDDLTGFEITYLLELPEPFSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPN 426
+FFFLDD+TGFEITYLLELPEPFSFIFTWFAAVP IV+LAL++T +I+KDFLILKGPCPN
Sbjct: 229 LFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPN 288
Query: 425 CGTENTSFFGTILSIASGGSSNKVKCSNCGTEMVYDSATRLITLPEGSNA 276
CGTEN SFFGTILSI + ++N VKCS CGTEMVYDS +RLITLPEG A
Sbjct: 289 CGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVYDSGSRLITLPEGGKA 338
>ref|NP_342523.1| SSU ribosomal protein S27E (rps27E) [Sulfolobus solfataricus]
gi|20140176|sp|Q97Z80|RS27_SULSO 30S ribosomal protein
S27e gi|25294906|pir||B90257 SSU ribosomal protein S27E
(rps27E) [imported] - Sulfolobus solfataricus
gi|13814235|gb|AAK41313.1| SSU ribosomal protein S27E
(rps27E) [Sulfolobus solfataricus]
Length = 66
Score = 35.8 bits (81), Expect = 0.45
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 446 LKGPCPNCGTENTSFFGTILSIASGGSSNKVKCSNCGTEMVY 321
L+ CPNCG E T F ++ V+C +CGTE+VY
Sbjct: 17 LRVKCPNCGNEQTIF---------SHATFPVRCLSCGTELVY 49
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,538,833
Number of Sequences: 1393205
Number of extensions: 11013336
Number of successful extensions: 29474
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 28463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29447
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
