Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005014A_C02 KMC005014A_c02
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB62170.1| glutamate dehydrogenase [Brassica napus] 226 2e-58
ref|NP_196361.1| glutamate dehydrogenase 2; protein id: At5g0744... 225 4e-58
emb|CAC18730.1| NADH glutamate dehydrogenase [Vitis vinifera] 222 3e-57
emb|CAD12373.1| glutamate dehydrogenase [Nicotiana tabacum] 221 8e-57
emb|CAA09478.1| glutamate dehydrogenase [Asparagus officinalis] 220 1e-56
>dbj|BAB62170.1| glutamate dehydrogenase [Brassica napus]
Length = 411
Score = 226 bits (575), Expect = 2e-58
Identities = 107/121 (88%), Positives = 113/121 (92%)
Frame = -3
Query: 614 GGVLNKENAADVKAKFVIEAANHPTDPDADEILSKKGVVILPDIYANAGGVTVSYFEWVQ 435
GGVLNKENA DVKAKF+IEAANHPTDPDADEILSKKGV+ILPDIYANAGGVTVSYFEWVQ
Sbjct: 291 GGVLNKENAGDVKAKFIIEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQ 350
Query: 434 NIQGFMWDEEKVNKELKNYMTRAFRNIKAMCKIHDCDLRMGAFTLGVNRVARATLLRGWE 255
NIQGFMW+EEKVN EL+ YMTRAF NIK+MC H C+LRMGAFTLGVNRVARAT LRGWE
Sbjct: 351 NIQGFMWEEEKVNLELQKYMTRAFHNIKSMCHTHSCNLRMGAFTLGVNRVARATQLRGWE 410
Query: 254 A 252
A
Sbjct: 411 A 411
>ref|NP_196361.1| glutamate dehydrogenase 2; protein id: At5g07440.1, supported by
cDNA: gi_1336083 [Arabidopsis thaliana]
gi|12229806|sp|Q38946|DHE2_ARATH Glutamate dehydrogenase
2 (GDH 2) gi|11252760|pir||T49883 glutamate
dehydrogenase 2 - Arabidopsis thaliana
gi|1336084|gb|AAB01222.1| glutamate dehydrogenase 2
[Arabidopsis thaliana] gi|7576182|emb|CAB87933.1|
glutamate dehydrogenase 2 [Arabidopsis thaliana]
Length = 411
Score = 225 bits (573), Expect = 4e-58
Identities = 106/121 (87%), Positives = 112/121 (91%)
Frame = -3
Query: 614 GGVLNKENAADVKAKFVIEAANHPTDPDADEILSKKGVVILPDIYANAGGVTVSYFEWVQ 435
GGVLNKENA DVKAKF++EAANHPTDPDADEILSKKGV+ILPDIYANAGGVTVSYFEWVQ
Sbjct: 291 GGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQ 350
Query: 434 NIQGFMWDEEKVNKELKNYMTRAFRNIKAMCKIHDCDLRMGAFTLGVNRVARATLLRGWE 255
NIQGFMW+EEKVN EL+ YMTRAF NIK MC H C+LRMGAFTLGVNRVARAT LRGWE
Sbjct: 351 NIQGFMWEEEKVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQLRGWE 410
Query: 254 A 252
A
Sbjct: 411 A 411
>emb|CAC18730.1| NADH glutamate dehydrogenase [Vitis vinifera]
Length = 411
Score = 222 bits (566), Expect = 3e-57
Identities = 106/121 (87%), Positives = 113/121 (92%)
Frame = -3
Query: 614 GGVLNKENAADVKAKFVIEAANHPTDPDADEILSKKGVVILPDIYANAGGVTVSYFEWVQ 435
GGVLNKENAADVKAKF+IEAANHPTDP+ADEILSKKGVVILPDIYANAGGVTVSYFEWVQ
Sbjct: 291 GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYFEWVQ 350
Query: 434 NIQGFMWDEEKVNKELKNYMTRAFRNIKAMCKIHDCDLRMGAFTLGVNRVARATLLRGWE 255
NIQGFMW+EEKVN EL+ YMT+AF NIKAMC+ H+C LRMGAFTL VNRVA AT LRGWE
Sbjct: 351 NIQGFMWEEEKVNNELQKYMTKAFHNIKAMCQSHNCSLRMGAFTLAVNRVACATTLRGWE 410
Query: 254 A 252
A
Sbjct: 411 A 411
>emb|CAD12373.1| glutamate dehydrogenase [Nicotiana tabacum]
Length = 411
Score = 221 bits (562), Expect = 8e-57
Identities = 100/121 (82%), Positives = 115/121 (94%)
Frame = -3
Query: 614 GGVLNKENAADVKAKFVIEAANHPTDPDADEILSKKGVVILPDIYANAGGVTVSYFEWVQ 435
GGV+N++NA D+KAK++IEAANHPTDP+ADEIL+KKGVVILPDIYAN+GGVTVSYFEWVQ
Sbjct: 291 GGVINRDNANDIKAKYIIEAANHPTDPEADEILAKKGVVILPDIYANSGGVTVSYFEWVQ 350
Query: 434 NIQGFMWDEEKVNKELKNYMTRAFRNIKAMCKIHDCDLRMGAFTLGVNRVARATLLRGWE 255
NIQGFMWDE+KVN ELK YMTR F+++K MCK H+CDLRMGAFTLGVNRVARAT+LRGWE
Sbjct: 351 NIQGFMWDEDKVNAELKTYMTRGFKDVKDMCKTHNCDLRMGAFTLGVNRVARATVLRGWE 410
Query: 254 A 252
A
Sbjct: 411 A 411
>emb|CAA09478.1| glutamate dehydrogenase [Asparagus officinalis]
Length = 411
Score = 220 bits (561), Expect = 1e-56
Identities = 102/121 (84%), Positives = 113/121 (93%)
Frame = -3
Query: 614 GGVLNKENAADVKAKFVIEAANHPTDPDADEILSKKGVVILPDIYANAGGVTVSYFEWVQ 435
GGV+N+ENA DV+AKF+IEAANHPTDP+ADEILSKKGV ILPDI AN+GGVTVSYFEWVQ
Sbjct: 291 GGVINRENANDVRAKFIIEAANHPTDPEADEILSKKGVCILPDILANSGGVTVSYFEWVQ 350
Query: 434 NIQGFMWDEEKVNKELKNYMTRAFRNIKAMCKIHDCDLRMGAFTLGVNRVARATLLRGWE 255
NIQGFMWDEEKVN ELK YMT+ F+++K MCK H+CDLRMGAFTLGVNRVARATLLRGWE
Sbjct: 351 NIQGFMWDEEKVNSELKTYMTKGFKHVKEMCKTHNCDLRMGAFTLGVNRVARATLLRGWE 410
Query: 254 A 252
A
Sbjct: 411 A 411
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,738,337
Number of Sequences: 1393205
Number of extensions: 9782497
Number of successful extensions: 23079
Number of sequences better than 10.0: 306
Number of HSP's better than 10.0 without gapping: 22493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23047
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
