Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005012A_C01 KMC005012A_c01
(1022 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gi|289732... 369 e-101
ref|NP_194285.1| putative protein; protein id: At4g25550.1 [Arab... 317 1e-85
pir||C85295 hypothetical protein AT4g25550 [imported] - Arabidop... 313 2e-84
ref|NP_008937.1| cleavage and polyadenylation specific factor 5,... 243 5e-63
ref|NP_080899.1| cleavage and polyadenylation specific factor 5;... 243 5e-63
>dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gi|28973229|gb|AAO63939.1|
unknown protein [Arabidopsis thaliana]
Length = 200
Score = 369 bits (947), Expect = e-101
Identities = 172/200 (86%), Positives = 188/200 (94%)
Frame = -1
Query: 944 MVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGMLLVQEHN 765
M SQVVNTYPLS+Y+FGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVEG+LLVQEHN
Sbjct: 1 MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60
Query: 764 HPHILLLQXGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 585
HPHILLLQ GNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS ALVPDW +GECVA WW
Sbjct: 61 HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120
Query: 584 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPQHLKLLAVPLFELYDYVQRYG 405
RPNFET+MYPYCPPHITKPKECK+L++VHLSE+EYFAVP++LKLLAVPLFELYD VQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180
Query: 404 PVISTIPQQLSRFQSQMITN 345
PVISTIPQQLSRF MI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200
>ref|NP_194285.1| putative protein; protein id: At4g25550.1 [Arabidopsis thaliana]
gi|7486820|pir||T05792 hypothetical protein M7J2.80 -
Arabidopsis thaliana gi|2980795|emb|CAA18171.1| putative
protein [Arabidopsis thaliana]
Length = 210
Score = 317 bits (813), Expect = 1e-85
Identities = 154/198 (77%), Positives = 168/198 (84%), Gaps = 21/198 (10%)
Frame = -1
Query: 944 MVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGMLLVQEHN 765
M SQVVNTYPLS+Y+FGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVEG+LLVQEHN
Sbjct: 1 MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60
Query: 764 HPHILLLQXGNTFCKLPGGRLKPGEN---------------EIEGLKRKLTSKLGANSPA 630
HPHILLLQ GNTFCKLPGGRLKPGEN E +GLKRKLTSKLG NS A
Sbjct: 61 HPHILLLQIGNTFCKLPGGRLKPGENGIQLPPFWVYYVVSAEADGLKRKLTSKLGGNSAA 120
Query: 629 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPK------ECKKLFLVHLSEREYFAVP 468
LVPDW +GECVA WWRPNFET+MYPYCPPHITKPK ECK+L++VHLSE+EYFAVP
Sbjct: 121 LVPDWTVGECVATWWRPNFETMMYPYCPPHITKPKVVKKHNECKRLYIVHLSEKEYFAVP 180
Query: 467 QHLKLLAVPLFELYDYVQ 414
++LKLLAVPLFELYD VQ
Sbjct: 181 KNLKLLAVPLFELYDNVQ 198
>pir||C85295 hypothetical protein AT4g25550 [imported] - Arabidopsis thaliana
gi|7269405|emb|CAB81365.1| putative protein [Arabidopsis
thaliana]
Length = 209
Score = 313 bits (803), Expect = 2e-84
Identities = 152/195 (77%), Positives = 166/195 (84%), Gaps = 21/195 (10%)
Frame = -1
Query: 935 SQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGMLLVQEHNHPH 756
SQVVNTYPLS+Y+FGTKEPK+EKDTSVADRLARMK+ YMKEGMRTSVEG+LLVQEHNHPH
Sbjct: 3 SQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKIKYMKEGMRTSVEGILLVQEHNHPH 62
Query: 755 ILLLQXGNTFCKLPGGRLKPGEN---------------EIEGLKRKLTSKLGANSPALVP 621
ILLLQ GNTFCKLPGGRLKPGEN E +GLKRKLTSKLG NS ALVP
Sbjct: 63 ILLLQIGNTFCKLPGGRLKPGENGIQLPPVWVYYVVSAEADGLKRKLTSKLGGNSAALVP 122
Query: 620 DWQIGECVAIWWRPNFETIMYPYCPPHITKPK------ECKKLFLVHLSEREYFAVPQHL 459
DW +GECVA WWRPNFET+MYPYCPPHITKPK ECK+L++VHLSE+EYFAVP++L
Sbjct: 123 DWTVGECVATWWRPNFETMMYPYCPPHITKPKVVKKHNECKRLYIVHLSEKEYFAVPKNL 182
Query: 458 KLLAVPLFELYDYVQ 414
KLLAVPLFELYD VQ
Sbjct: 183 KLLAVPLFELYDNVQ 197
>ref|NP_008937.1| cleavage and polyadenylation specific factor 5, 25 kD subunit;
pre-mRNA cleavage factor Im (25kD); pre-mRNA cleavage
factor Im, 25kD subunit [Homo sapiens]
gi|2887288|emb|CAA05026.1| mRNA cleavage factor I 25 kDa
subunit [Homo sapiens]
gi|12655103|gb|AAH01403.1|AAH01403 pre-mRNA cleavage
factor Im (25kD) [Homo sapiens]
Length = 227
Score = 243 bits (619), Expect = 5e-63
Identities = 116/201 (57%), Positives = 145/201 (71%)
Frame = -1
Query: 968 KKLEKKKKMVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEG 789
K +++ K + + +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VEG
Sbjct: 23 KYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEG 82
Query: 788 MLLVQEHNHPHILLLQXGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQI 609
+L+V EH PH+LLLQ G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I
Sbjct: 83 VLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVI 141
Query: 608 GECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPQHLKLLAVPLFEL 429
+C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVP++ KL+A PLFEL
Sbjct: 142 DDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFEL 201
Query: 428 YDYVQRYGPVISTIPQQLSRF 366
YD YGP+IS++PQ LSRF
Sbjct: 202 YDNAPGYGPIISSLPQLLSRF 222
>ref|NP_080899.1| cleavage and polyadenylation specific factor 5; RIKEN cDNA
3110048P04 gene; cleavage and polyadenylation specific
factor 5, 25 kD subunit [Mus musculus]
gi|27658562|ref|XP_214640.1| similar to cleavage and
polyadenylation specific factor 5, 25 kD subunit; RIKEN
cDNA 3110048P04 gene [Mus musculus] [Rattus norvegicus]
gi|12847971|dbj|BAB27778.1| unnamed protein product [Mus
musculus] gi|12859636|dbj|BAB31718.1| unnamed protein
product [Mus musculus] gi|14198424|gb|AAH08270.1| RIKEN
cDNA 3110048P04 gene [Mus musculus]
Length = 227
Score = 243 bits (619), Expect = 5e-63
Identities = 116/201 (57%), Positives = 145/201 (71%)
Frame = -1
Query: 968 KKLEKKKKMVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEG 789
K +++ K + + +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VEG
Sbjct: 23 KYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEG 82
Query: 788 MLLVQEHNHPHILLLQXGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQI 609
+L+V EH PH+LLLQ G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I
Sbjct: 83 VLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVI 141
Query: 608 GECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPQHLKLLAVPLFEL 429
+C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVP++ KL+A PLFEL
Sbjct: 142 DDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFEL 201
Query: 428 YDYVQRYGPVISTIPQQLSRF 366
YD YGP+IS++PQ LSRF
Sbjct: 202 YDNAPGYGPIISSLPQLLSRF 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 875,744,728
Number of Sequences: 1393205
Number of extensions: 20245676
Number of successful extensions: 113160
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 69494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101425
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59601274632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
