Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004999A_C01 KMC004999A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO26213.1| type 5 protein serine/threonine phosphatase 62 kD... 135 5e-32
gb|AAN64317.1| type 5 serine/threonine phosphatase 55 kDa isofor... 135 5e-32
gb|AAO26216.1| type 5 protein serine/threonine phosphatase 60 kD... 134 1e-31
pir||E84858 phosphoprotein phosphatase (EC 3.1.3.16) At2g42810 [... 134 1e-31
ref|NP_565985.1| putative phosphoprotein phosphatase; protein id... 134 1e-31
>gb|AAO26213.1| type 5 protein serine/threonine phosphatase 62 kDa isoform
[Lycopersicon esculentum] gi|28141085|gb|AAO26215.1|
type 5 protein serine/threonine phosphatase 62 kDa
isoform [Lycopersicon esculentum]
Length = 556
Score = 135 bits (340), Expect(2) = 5e-32
Identities = 63/68 (92%), Positives = 67/68 (97%)
Frame = -2
Query: 619 DLVVRSHEVKDEGYEIEHNGKLITVFSAPNYCDQMGNKGAFIRFKAPDLKPDIVTFSAVA 440
DLVVRSHEVKDEGYEIEH+GKLITVFSAPNYCDQMGNKGAFIRF+APD+KP+IVTFSAV
Sbjct: 479 DLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVP 538
Query: 439 HPDVKPMA 416
HPDVKPMA
Sbjct: 539 HPDVKPMA 546
Score = 24.3 bits (51), Expect(2) = 5e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 435 PMLSQWPYANNFLRMF 388
P + YANNFLRMF
Sbjct: 540 PDVKPMAYANNFLRMF 555
>gb|AAN64317.1| type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon
esculentum] gi|28141084|gb|AAO26214.1| type 5 protein
serine/threonine phosphatase 55 kDa isoform
[Lycopersicon esculentum]
Length = 485
Score = 135 bits (340), Expect(2) = 5e-32
Identities = 63/68 (92%), Positives = 67/68 (97%)
Frame = -2
Query: 619 DLVVRSHEVKDEGYEIEHNGKLITVFSAPNYCDQMGNKGAFIRFKAPDLKPDIVTFSAVA 440
DLVVRSHEVKDEGYEIEH+GKLITVFSAPNYCDQMGNKGAFIRF+APD+KP+IVTFSAV
Sbjct: 408 DLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVP 467
Query: 439 HPDVKPMA 416
HPDVKPMA
Sbjct: 468 HPDVKPMA 475
Score = 24.3 bits (51), Expect(2) = 5e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 435 PMLSQWPYANNFLRMF 388
P + YANNFLRMF
Sbjct: 469 PDVKPMAYANNFLRMF 484
>gb|AAO26216.1| type 5 protein serine/threonine phosphatase 60 kDa isoform
[Arabidopsis thaliana]
Length = 538
Score = 134 bits (336), Expect(2) = 1e-31
Identities = 61/68 (89%), Positives = 67/68 (97%)
Frame = -2
Query: 619 DLVVRSHEVKDEGYEIEHNGKLITVFSAPNYCDQMGNKGAFIRFKAPDLKPDIVTFSAVA 440
DL+VRSHEVKDEGYE+EH+GKLITVFSAPNYCDQMGNKGAFIRF+APD+KP+IVTFSAV
Sbjct: 461 DLLVRSHEVKDEGYEVEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVP 520
Query: 439 HPDVKPMA 416
HPDVKPMA
Sbjct: 521 HPDVKPMA 528
Score = 24.3 bits (51), Expect(2) = 1e-31
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 435 PMLSQWPYANNFLRMF 388
P + YANNFLRMF
Sbjct: 522 PDVKPMAYANNFLRMF 537
>pir||E84858 phosphoprotein phosphatase (EC 3.1.3.16) At2g42810 [similarity] -
Arabidopsis thaliana
Length = 533
Score = 134 bits (336), Expect(2) = 1e-31
Identities = 61/68 (89%), Positives = 67/68 (97%)
Frame = -2
Query: 619 DLVVRSHEVKDEGYEIEHNGKLITVFSAPNYCDQMGNKGAFIRFKAPDLKPDIVTFSAVA 440
DL+VRSHEVKDEGYE+EH+GKLITVFSAPNYCDQMGNKGAFIRF+APD+KP+IVTFSAV
Sbjct: 456 DLLVRSHEVKDEGYEVEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVP 515
Query: 439 HPDVKPMA 416
HPDVKPMA
Sbjct: 516 HPDVKPMA 523
Score = 24.3 bits (51), Expect(2) = 1e-31
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 435 PMLSQWPYANNFLRMF 388
P + YANNFLRMF
Sbjct: 517 PDVKPMAYANNFLRMF 532
>ref|NP_565985.1| putative phosphoprotein phosphatase; protein id: At2g42810.1,
supported by cDNA: gi_16930440 [Arabidopsis thaliana]
gi|16930441|gb|AAL31906.1|AF419574_1 At2g42810/F7D19.19
[Arabidopsis thaliana] gi|20197966|gb|AAD21727.2|
putative phosphoprotein phosphatase [Arabidopsis
thaliana]
Length = 484
Score = 134 bits (336), Expect(2) = 1e-31
Identities = 61/68 (89%), Positives = 67/68 (97%)
Frame = -2
Query: 619 DLVVRSHEVKDEGYEIEHNGKLITVFSAPNYCDQMGNKGAFIRFKAPDLKPDIVTFSAVA 440
DL+VRSHEVKDEGYE+EH+GKLITVFSAPNYCDQMGNKGAFIRF+APD+KP+IVTFSAV
Sbjct: 407 DLLVRSHEVKDEGYEVEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVP 466
Query: 439 HPDVKPMA 416
HPDVKPMA
Sbjct: 467 HPDVKPMA 474
Score = 24.3 bits (51), Expect(2) = 1e-31
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 435 PMLSQWPYANNFLRMF 388
P + YANNFLRMF
Sbjct: 468 PDVKPMAYANNFLRMF 483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,343,627
Number of Sequences: 1393205
Number of extensions: 10037195
Number of successful extensions: 22650
Number of sequences better than 10.0: 464
Number of HSP's better than 10.0 without gapping: 22103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22569
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
