Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004997A_C01 KMC004997A_c01
(706 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD39086.1|AF093507_1 xyloglucan endo-transglycosylase-like p... 226 3e-58
pir||T09870 probable endo-xyloglucan transferase - upland cotton... 212 4e-54
gb|AAM62514.1| endo-xyloglucan transferase-like protein [Arabido... 202 4e-51
ref|NP_195494.1| xyloglucan endotransglycosylase, putative; prot... 202 4e-51
pir||T05895 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) F6... 201 1e-50
>gb|AAD39086.1|AF093507_1 xyloglucan endo-transglycosylase-like protein [Medicago truncatula]
Length = 276
Score = 226 bits (575), Expect = 3e-58
Identities = 99/117 (84%), Positives = 110/117 (93%)
Frame = -2
Query: 705 NEARGIPYPKMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCAVPGPA 526
NEA+GIPYPKMQAMGV+STLWEADNWATRGGLEKI+WSKAPFYAYYKDFDIEGCA+PGP
Sbjct: 161 NEAKGIPYPKMQAMGVFSTLWEADNWATRGGLEKINWSKAPFYAYYKDFDIEGCAIPGPT 220
Query: 525 NCASNVQRNWWEGAEYQALSAIEARRYRWVRMNHVIYDYCQDRSRFPVTPLECHAGI 355
C++N +NWWEG EYQALSAIEARRYRWVRMNHVIYDYCQD+SR+P+TP EC +GI
Sbjct: 221 TCSTN-PKNWWEGVEYQALSAIEARRYRWVRMNHVIYDYCQDKSRYPMTPHECLSGI 276
>pir||T09870 probable endo-xyloglucan transferase - upland cotton (fragment)
gi|2244732|dbj|BAA21107.1| endo-xyloglucan transferase
[Gossypium hirsutum]
Length = 279
Score = 212 bits (540), Expect = 4e-54
Identities = 93/113 (82%), Positives = 102/113 (89%)
Frame = -2
Query: 705 NEARGIPYPKMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCAVPGPA 526
NEAR IPYPK+Q MGVYSTLWEAD+WATRGGLEKIDW+KAPF AYYKDFDIEGC VPGP
Sbjct: 164 NEARNIPYPKLQPMGVYSTLWEADDWATRGGLEKIDWTKAPFLAYYKDFDIEGCPVPGPV 223
Query: 525 NCASNVQRNWWEGAEYQALSAIEARRYRWVRMNHVIYDYCQDRSRFPVTPLEC 367
NCA+N RNWWEG YQAL+A+EA+RYRWVRMNHVIYDYC D+SR+PVTP EC
Sbjct: 224 NCATN-SRNWWEGTAYQALNAMEAKRYRWVRMNHVIYDYCTDKSRYPVTPPEC 275
>gb|AAM62514.1| endo-xyloglucan transferase-like protein [Arabidopsis thaliana]
Length = 293
Score = 202 bits (514), Expect = 4e-51
Identities = 86/117 (73%), Positives = 101/117 (85%)
Frame = -2
Query: 705 NEARGIPYPKMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCAVPGPA 526
NEAR +PYP+ Q MGVYSTLWEAD+WATRGG+EKI+WS+APFYAYYKDFDIEGC VPGPA
Sbjct: 178 NEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPA 237
Query: 525 NCASNVQRNWWEGAEYQALSAIEARRYRWVRMNHVIYDYCQDRSRFPVTPLECHAGI 355
+C +N +NWWEG+ Y LS +EAR YRWVR+NH++YDYC D+SRFPV P EC AGI
Sbjct: 238 DCPAN-SKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI 293
>ref|NP_195494.1| xyloglucan endotransglycosylase, putative; protein id: At4g37800.1,
supported by cDNA: 142634., supported by cDNA:
gi_20260251 [Arabidopsis thaliana]
gi|7447406|pir||T06027 xyloglucan
endo-1,4-beta-D-glucanase (EC 3.2.1.-) T28I19.80 -
Arabidopsis thaliana gi|4490725|emb|CAB38928.1|
endo-xyloglucan transferase-like protein [Arabidopsis
thaliana] gi|7270763|emb|CAB80445.1| endo-xyloglucan
transferase-like protein [Arabidopsis thaliana]
gi|20260252|gb|AAM13024.1| unknown protein [Arabidopsis
thaliana] gi|22136496|gb|AAM91326.1| unknown protein
[Arabidopsis thaliana]
Length = 293
Score = 202 bits (514), Expect = 4e-51
Identities = 86/117 (73%), Positives = 101/117 (85%)
Frame = -2
Query: 705 NEARGIPYPKMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCAVPGPA 526
NEAR +PYP+ Q MGVYSTLWEAD+WATRGG+EKI+WS+APFYAYYKDFDIEGC VPGPA
Sbjct: 178 NEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPA 237
Query: 525 NCASNVQRNWWEGAEYQALSAIEARRYRWVRMNHVIYDYCQDRSRFPVTPLECHAGI 355
+C +N +NWWEG+ Y LS +EAR YRWVR+NH++YDYC D+SRFPV P EC AGI
Sbjct: 238 DCPAN-SKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI 293
>pir||T05895 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) F6H11.140 -
Arabidopsis thaliana gi|2827712|emb|CAA16685.1|
endoxyloglucan tranferase-like protein [Arabidopsis
thaliana] gi|10177331|dbj|BAB10680.1| xyloglucan
endo-transglycosylase-like protein [Arabidopsis
thaliana] gi|14994271|gb|AAK73270.1| xyloglucan
endo-transglycosylase-like protein [Arabidopsis
thaliana]
Length = 269
Score = 201 bits (510), Expect = 1e-50
Identities = 89/115 (77%), Positives = 97/115 (83%)
Frame = -2
Query: 705 NEARGIPYPKMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCAVPGPA 526
NEA+ I YP Q MGVYSTLWEAD+WATRGGLEKIDWSKAPFYAYYKDFDIEGC VPGP
Sbjct: 156 NEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPT 215
Query: 525 NCASNVQRNWWEGAEYQALSAIEARRYRWVRMNHVIYDYCQDRSRFPVTPLECHA 361
C SN NWWEG YQ+L+A+EARRYRWVR+NH++YDYC DRSRFPV P EC A
Sbjct: 216 FCPSN-PHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECRA 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,218,754
Number of Sequences: 1393205
Number of extensions: 13584980
Number of successful extensions: 32378
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 31237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32278
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
