Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004989A_C01 KMC004989A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 37 0.18
ref|NP_115585.1| hypothetical protein FLJ21777 [Homo sapiens] gi... 36 0.30
ref|NP_006485.1| Ets2 repressor factor [Homo sapiens] gi|1706687... 33 1.9
gb|AAD11987.1| ERF_HUMAN [Homo sapiens] gi|18490808|gb|AAH22231.... 32 3.3
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 36.6 bits (83), Expect = 0.18
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = -1
Query: 400 PNDKKTSKIEIRAPPLSSLKLCNNHPIRESKTPTPRRKRRRHRLRSLG---RFRIFDLRR 230
P+ +K SK E S + S++P+ R RRRHR RS R R RR
Sbjct: 259 PSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRR 318
Query: 229 MWVERWCGIQPRSENPNPRSRRRNHLRSLHRFPTSICEGSGSSSLSTK 86
R PR P PR RR R ++ GS SSS S++
Sbjct: 319 PSPRR--RTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSR 364
>ref|NP_115585.1| hypothetical protein FLJ21777 [Homo sapiens]
gi|10437941|dbj|BAB15129.1| unnamed protein product
[Homo sapiens]
Length = 204
Score = 35.8 bits (81), Expect = 0.30
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Frame = -2
Query: 504 PPPPSSSSSSSSSNKFPDNQTLHNDKLCLAKPSPYQTIK---------KHPKSRSEHHRC 352
PPPP SSS+SS P + H+D C P+ Y+ + P+SRS H
Sbjct: 33 PPPPPPSSSASSLLLLPPPRPPHSDITCSQSPALYRRRRLGPEGPARPVAPQSRSSPHPL 92
Query: 351 QV*SFVTTIQLENQKPPH-PEGRGGGTVLDLSVGFESS 241
V+ PPH PE T + G +++
Sbjct: 93 TRTLHVSRAAAAGSAPPHSPEHAAPPTAHGVRAGTDTA 130
>ref|NP_006485.1| Ets2 repressor factor [Homo sapiens] gi|1706687|sp|P50548|ERF_HUMAN
ETS-domain transcription factor ERF (Ets2 repressor
factor) gi|2135090|pir||S59133 ETS2 repressor factor -
human gi|1015337|gb|AAA86686.1| ERF
Length = 548
Score = 33.1 bits (74), Expect = 1.9
Identities = 39/148 (26%), Positives = 49/148 (32%), Gaps = 46/148 (31%)
Frame = -2
Query: 510 DPPPPPSSSSSSSSSNKFPDNQTLHNDKL------------------------------C 421
+ PP PSS+SSSSSS+ P L L
Sbjct: 356 ETPPVPSSASSSSSSSSSPFKFKLQRPPLGRRQRAAGEKAVAAADKSGGSAGGLAEGAGA 415
Query: 420 LAKPSPYQTIKKHPKSRSEHHRCQV*SFVTTIQLENQK-------------PPHP---EG 289
LA P P IK P S E + VT I E+++ PP P E
Sbjct: 416 LAPPPPPPQIKVEPISEGESEEVE----VTDISDEDEEDGEVFKTPRAPPAPPKPEPGEA 471
Query: 288 RGGGTVLDLSVGFESSICEGCGLSDGAG 205
G + L + F+ E C L G G
Sbjct: 472 PGASQCMPLKLRFKRRWSEDCRLEGGGG 499
>gb|AAD11987.1| ERF_HUMAN [Homo sapiens] gi|18490808|gb|AAH22231.1| Ets2 repressor
factor [Homo sapiens]
Length = 548
Score = 32.3 bits (72), Expect = 3.3
Identities = 39/148 (26%), Positives = 49/148 (32%), Gaps = 46/148 (31%)
Frame = -2
Query: 510 DPPPPPSSSSSSSSSNKFPDNQTLHNDKL------------------------------C 421
+ PP PSS+SSSSSS+ P L L
Sbjct: 356 ETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKSGGSAGGLAEGAGA 415
Query: 420 LAKPSPYQTIKKHPKSRSEHHRCQV*SFVTTIQLENQK-------------PPHP---EG 289
LA P P IK P S E + VT I E+++ PP P E
Sbjct: 416 LAPPPPPPQIKVEPISEGESEEVE----VTDISDEDEEDGEVFKTPRAPPAPPKPEPGEA 471
Query: 288 RGGGTVLDLSVGFESSICEGCGLSDGAG 205
G + L + F+ E C L G G
Sbjct: 472 PGASQCMPLKLRFKRRWSEDCRLEGGGG 499
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,841,555
Number of Sequences: 1393205
Number of extensions: 13801115
Number of successful extensions: 72038
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 53046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68411
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
