Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004986A_C01 KMC004986A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199655.1| putative protein; protein id: At5g48440.1 [Arab... 169 3e-41
ref|NP_637768.1| D-amino acid oxidase [Xanthomonas campestris pv... 91 1e-17
ref|NP_642864.1| D-amino acid oxidase [Xanthomonas axonopodis pv... 88 6e-17
ref|NP_656716.1| DAO, FAD dependent oxidoreductase [Bacillus ant... 74 1e-12
ref|NP_630387.1| putative secreted oxidoreductase [Streptomyces ... 70 2e-11
>ref|NP_199655.1| putative protein; protein id: At5g48440.1 [Arabidopsis thaliana]
gi|8777374|dbj|BAA96964.1| gene_id:MJE7.7~similar to
unknown protein~sp|P33642 [Arabidopsis thaliana]
Length = 459
Score = 169 bits (427), Expect = 3e-41
Identities = 80/119 (67%), Positives = 97/119 (81%)
Frame = -2
Query: 542 TVDAAGNLLIGSSREFAGFNTDLDESVVSYIWKRVGEFFPKLKMLSLSDLSADRKVRVGL 363
T+D +GNL++GSSREF GF+T+ DE ++ IW+R EFFPKL+ +SL D +RKVRVGL
Sbjct: 335 TMDTSGNLVLGSSREFVGFDTEADEFIIRCIWERAAEFFPKLRDISLEDFIRNRKVRVGL 394
Query: 362 RPYMPDGKPMIGPVPGLSNVYLAAGHEGGGLSMALGTAEMVVDMVLGCLGKVDSAPFAV 186
RPYMPDGKP+IG VPGL N+YLAAGHEGGGLSMAL TAEMV DMVLG +VD++ F V
Sbjct: 395 RPYMPDGKPVIGSVPGLQNMYLAAGHEGGGLSMALATAEMVTDMVLGKPSQVDTSTFGV 453
>ref|NP_637768.1| D-amino acid oxidase [Xanthomonas campestris pv. campestris str.
ATCC 33913] gi|21113570|gb|AAM41692.1| D-amino acid
oxidase [Xanthomonas campestris pv. campestris str. ATCC
33913]
Length = 389
Score = 90.5 bits (223), Expect = 1e-17
Identities = 47/118 (39%), Positives = 72/118 (60%)
Frame = -2
Query: 527 GNLLIGSSREFAGFNTDLDESVVSYIWKRVGEFFPKLKMLSLSDLSADRKVRVGLRPYMP 348
G +LIGSSR++ + L ++ + +R + P L+ L +V GLRP P
Sbjct: 273 GQILIGSSRQYGADDRTLSMPILQQMLQRAFAYLPVLRELQAI------RVWTGLRPATP 326
Query: 347 DGKPMIGPVPGLSNVYLAAGHEGGGLSMALGTAEMVVDMVLGCLGKVDSAPFAVDRVL 174
DG+P +GPVPG +V++AAGHEG G++ ALG+A ++VD +LG +D AP+A R +
Sbjct: 327 DGRPYLGPVPGRRDVWVAAGHEGLGVTTALGSARVIVDSLLGRTPAIDPAPYAPARAV 384
>ref|NP_642864.1| D-amino acid oxidase [Xanthomonas axonopodis pv. citri str. 306]
gi|21108820|gb|AAM37400.1| D-amino acid oxidase
[Xanthomonas axonopodis pv. citri str. 306]
Length = 383
Score = 88.2 bits (217), Expect = 6e-17
Identities = 48/116 (41%), Positives = 70/116 (59%)
Frame = -2
Query: 527 GNLLIGSSREFAGFNTDLDESVVSYIWKRVGEFFPKLKMLSLSDLSADRKVRVGLRPYMP 348
G +LIGSSR+F + L V+ + +R + P L+ L +V GLRP P
Sbjct: 267 GQILIGSSRQFGEHDRALSMPVLQQMLQRAFAYLPVLRELQAI------RVWTGLRPATP 320
Query: 347 DGKPMIGPVPGLSNVYLAAGHEGGGLSMALGTAEMVVDMVLGCLGKVDSAPFAVDR 180
DG+P +G VPG +V++AAGHEG G++ ALG+A ++VD +LG +D AP+A R
Sbjct: 321 DGRPYLGKVPGRRDVWVAAGHEGLGVTTALGSARVIVDSLLGRTPAIDPAPYAPAR 376
>ref|NP_656716.1| DAO, FAD dependent oxidoreductase [Bacillus anthracis A2012]
Length = 391
Score = 73.9 bits (180), Expect = 1e-12
Identities = 39/99 (39%), Positives = 60/99 (60%)
Frame = -2
Query: 524 NLLIGSSREFAGFNTDLDESVVSYIWKRVGEFFPKLKMLSLSDLSADRKVRVGLRPYMPD 345
N LIGSSREF GF+T ++ V+ I R F+PK+ +D+ R GLRP+ D
Sbjct: 275 NFLIGSSREFVGFHTKINNEVIKCIANRAIRFYPKM-----ADMMVIRSY-AGLRPWTED 328
Query: 344 GKPMIGPVPGLSNVYLAAGHEGGGLSMALGTAEMVVDMV 228
P+I V + N ++AAGHEG G+S+A T +++ +++
Sbjct: 329 HLPIISRVEHIPNYFIAAGHEGDGISLAAVTGKVIEELL 367
>ref|NP_630387.1| putative secreted oxidoreductase [Streptomyces coelicolor A3(2)]
gi|13940328|emb|CAC37891.1| putative secreted
oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 389
Score = 69.7 bits (169), Expect = 2e-11
Identities = 38/102 (37%), Positives = 57/102 (55%)
Frame = -2
Query: 527 GNLLIGSSREFAGFNTDLDESVVSYIWKRVGEFFPKLKMLSLSDLSADRKVRVGLRPYMP 348
G +LIG+SRE GF+T ++ +VV+ + + FP L+ + L + G RPY P
Sbjct: 266 GTILIGASRERVGFDTTMNTAVVARLAAQACRLFPFLRGVHLM------RAYRGFRPYCP 319
Query: 347 DGKPMIGPVPGLSNVYLAAGHEGGGLSMALGTAEMVVDMVLG 222
D P++GP P + V A GHEG G+ +A T +V +LG
Sbjct: 320 DHLPVVGPDPRVPGVVHACGHEGAGIGLAPATGALVTAHLLG 361
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,520,582
Number of Sequences: 1393205
Number of extensions: 10600774
Number of successful extensions: 33505
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 32063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33374
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
