Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004980A_C01 KMC004980A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194688.1| putative protein; protein id: At4g29590.1 [Arab... 43 0.002
gb|AAM61165.1| unknown [Arabidopsis thaliana] 43 0.002
gb|AAK53012.1|AF375428_1 AT4g29590/T16L4_100 [Arabidopsis thalia... 43 0.002
dbj|BAB89117.1| B1142C05.17 [Oryza sativa (japonica cultivar-gro... 37 0.13
ref|NP_711316.1| hypothetical protein [Leptospira interrogans se... 35 0.51
>ref|NP_194688.1| putative protein; protein id: At4g29590.1 [Arabidopsis thaliana]
gi|7487096|pir||T09922 hypothetical protein T16L4.100 -
Arabidopsis thaliana gi|5123553|emb|CAB45319.1| putative
protein [Arabidopsis thaliana]
gi|7269858|emb|CAB79717.1| putative protein [Arabidopsis
thaliana]
Length = 317
Score = 42.7 bits (99), Expect = 0.002
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -3
Query: 214 AVDISPNRGRSDPMYIVYFRKL 149
AVDISPN GRSDPMY+VY RKL
Sbjct: 293 AVDISPNPGRSDPMYVVYSRKL 314
>gb|AAM61165.1| unknown [Arabidopsis thaliana]
Length = 317
Score = 42.7 bits (99), Expect = 0.002
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -3
Query: 214 AVDISPNRGRSDPMYIVYFRKL 149
AVDISPN GRSDPMY+VY RKL
Sbjct: 293 AVDISPNPGRSDPMYVVYSRKL 314
>gb|AAK53012.1|AF375428_1 AT4g29590/T16L4_100 [Arabidopsis thaliana]
gi|21464553|gb|AAM52231.1| AT4g29590/T16L4_100
[Arabidopsis thaliana]
Length = 250
Score = 42.7 bits (99), Expect = 0.002
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -3
Query: 214 AVDISPNRGRSDPMYIVYFRKL 149
AVDISPN GRSDPMY+VY RKL
Sbjct: 226 AVDISPNPGRSDPMYVVYSRKL 247
>dbj|BAB89117.1| B1142C05.17 [Oryza sativa (japonica cultivar-group)]
Length = 307
Score = 37.0 bits (84), Expect = 0.13
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -3
Query: 214 AVDISPNRGRSDPMYIVYFRK 152
AVDISPN GR+DPMY+V RK
Sbjct: 284 AVDISPNPGRTDPMYVVQSRK 304
>ref|NP_711316.1| hypothetical protein [Leptospira interrogans serovar lai str.
56601] gi|24194673|gb|AAN48334.1|AE011296_4 hypothetical
protein [Leptospira interrogans serovar lai str. 56601]
Length = 391
Score = 35.0 bits (79), Expect = 0.51
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 191 TIRRYIDSLQKNVNGIKPSIYFSNGNTFVLYETLQRLV 304
TI+RY+DS +K + GI +FS + VLY+ L + V
Sbjct: 47 TIQRYVDSGEKIIAGISDETHFSENDEIVLYKILAKYV 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,239,983
Number of Sequences: 1393205
Number of extensions: 7263915
Number of successful extensions: 13187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13185
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
