Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004975A_C01 KMC004975A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174978.1| ligand-gated ion channel, putative; protein id:... 64 8e-10
pir||T06128 hypothetical protein F23E12.150 - Arabidopsis thalia... 56 2e-07
gb|AAL24126.1| unknown protein [Arabidopsis thaliana] 56 2e-07
ref|NP_567981.1| putative protein; protein id: At4g35290.1, supp... 56 2e-07
pir||T51131 ligand gated channel-like protein [imported] - rape ... 55 6e-07
>ref|NP_174978.1| ligand-gated ion channel, putative; protein id: At1g42540.1
[Arabidopsis thaliana] gi|25405080|pir||C96495 probable
ligand-gated ion channel [imported] - Arabidopsis
thaliana gi|12322630|gb|AAG51316.1|AC025815_3
ligand-gated ion channel, putative [Arabidopsis thaliana]
Length = 933
Score = 64.3 bits (155), Expect = 8e-10
Identities = 39/80 (48%), Positives = 54/80 (66%), Gaps = 5/80 (6%)
Frame = -1
Query: 514 ACLLALFIYLIQIVSQ-YRKPCSD----DHELTDPSSGSRSSRLRTFLSFMDEKEETVKN 350
ACLLALF+Y +QI+ Q Y+KP D D + SS RS+RL+ FLS MDEKEE+ K+
Sbjct: 839 ACLLALFLYFVQIIRQLYKKPTDDAIARDQQQNHDSSSMRSTRLQRFLSLMDEKEES-KH 897
Query: 349 RSQRRRMERISNRSSVGGST 290
S++R+++ N +S GST
Sbjct: 898 ESKKRKIDGSMNDTS--GST 915
>pir||T06128 hypothetical protein F23E12.150 - Arabidopsis thaliana
gi|3080421|emb|CAA18740.1| putative protein [Arabidopsis
thaliana] gi|7270481|emb|CAB80246.1| putative protein
[Arabidopsis thaliana]
Length = 925
Score = 56.2 bits (134), Expect = 2e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -1
Query: 514 ACLLALFIYLIQIVSQYRKPCSDDHELTDPS-SGSRSSRLRTFLSFMDEKEETVKNRSQR 338
+C +ALFIY +IV + + D E T PS SRS L+TFL++ DEKE+ K R +R
Sbjct: 852 SCFIALFIYFFKIVRDFFRHGKYDEEATVPSPESSRSKSLQTFLAYFDEKEDESKRRMKR 911
Query: 337 RRMERISNRSS 305
+R + +S + S
Sbjct: 912 KRNDDLSLKPS 922
>gb|AAL24126.1| unknown protein [Arabidopsis thaliana]
Length = 912
Score = 56.2 bits (134), Expect = 2e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -1
Query: 514 ACLLALFIYLIQIVSQYRKPCSDDHELTDPS-SGSRSSRLRTFLSFMDEKEETVKNRSQR 338
+C +ALFIY +IV + + D E T PS SRS L+TFL++ DEKE+ K R +R
Sbjct: 839 SCFIALFIYFFKIVRDFFRHGKYDEEATVPSPESSRSKSLQTFLAYFDEKEDESKRRMKR 898
Query: 337 RRMERISNRSS 305
+R + +S + S
Sbjct: 899 KRNDDLSLKPS 909
>ref|NP_567981.1| putative protein; protein id: At4g35290.1, supported by cDNA:
gi_13160470, supported by cDNA: gi_16604666 [Arabidopsis
thaliana]
Length = 912
Score = 56.2 bits (134), Expect = 2e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -1
Query: 514 ACLLALFIYLIQIVSQYRKPCSDDHELTDPS-SGSRSSRLRTFLSFMDEKEETVKNRSQR 338
+C +ALFIY +IV + + D E T PS SRS L+TFL++ DEKE+ K R +R
Sbjct: 839 SCFIALFIYFFKIVRDFFRHGKYDEEATVPSPESSRSKSLQTFLAYFDEKEDESKRRMKR 898
Query: 337 RRMERISNRSS 305
+R + +S + S
Sbjct: 899 KRNDDLSLKPS 909
>pir||T51131 ligand gated channel-like protein [imported] - rape
gi|6650552|gb|AAF21901.1|AF109392_1 ligand gated
channel-like protein [Brassica napus]
Length = 912
Score = 54.7 bits (130), Expect = 6e-07
Identities = 30/79 (37%), Positives = 48/79 (59%), Gaps = 2/79 (2%)
Frame = -1
Query: 514 ACLLALFIYLIQIVSQY--RKPCSDDHELTDPSSGSRSSRLRTFLSFMDEKEETVKNRSQ 341
AC +ALFI+ +++V + KP ++ ++ P S SR +L+TFL+++DEKEE K R +
Sbjct: 835 ACFVALFIHFVKVVRNFIKHKPEEEEKDIPSPES-SRLKKLQTFLAYIDEKEEESKRRFK 893
Query: 340 RRRMERISNRSSVGGSTSI 284
R+R N +S S I
Sbjct: 894 RKRSSLSMNANSSISSRQI 912
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,645,629
Number of Sequences: 1393205
Number of extensions: 8754409
Number of successful extensions: 22030
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 21308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22008
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
