Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004974A_C01 KMC004974A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E84718 hypothetical protein At2g31260 [imported] - Arabidop... 64 2e-09
ref|NP_180684.2| unknown protein; protein id: At2g31260.1, suppo... 64 2e-09
sp|P41750|PGLB_ASPFL POLYGALACTURONASE B PRECURSOR (PECTINASE) (... 37 0.12
ref|NP_781300.1| lantibiotic permease protein spaE/mutE [Clostri... 33 3.0
ref|NP_643051.1| TonB-dependent receptor [Xanthomonas axonopodis... 33 3.0
>pir||E84718 hypothetical protein At2g31260 [imported] - Arabidopsis thaliana
gi|4432821|gb|AAD20671.1| unknown protein [Arabidopsis
thaliana]
Length = 865
Score = 63.5 bits (153), Expect = 2e-09
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Frame = -2
Query: 511 RAVSQLGASTSAPIFRESLI-------QDLNHNELSPSARSPWWDRSGPQGGHAQ----- 368
R + + ASTS FRES++ +D ++ R+ WW R G H+Q
Sbjct: 720 RDLLNMEASTSGQFFRESILRHDQPEGEDSYGSQHPLDGRNQWWGR----GNHSQISTAH 775
Query: 367 ----TSFFEPPDFNQPAAFG--YHDKYSDRGSEDQDHEQR-FYWRDYNK--LSRTACTDD 215
SF EPPDF G + +S R E++D E+ W + + LSRT DD
Sbjct: 776 PATTNSFIEPPDFINRYTAGNLLDNSWSRRSIEEEDEEEEELDWEENARRNLSRTTFMDD 835
Query: 214 -DLEAGEFKLHFDDIY-SRPPDTPT 146
D+EAG LHFDD+Y SRP +T T
Sbjct: 836 NDIEAG-IDLHFDDVYSSRPQETST 859
>ref|NP_180684.2| unknown protein; protein id: At2g31260.1, supported by cDNA:
gi_19715617, supported by cDNA: gi_19912148, supported by
cDNA: gi_20466355 [Arabidopsis thaliana]
gi|19715618|gb|AAL91630.1| At2g31260/F16D14.10
[Arabidopsis thaliana] gi|19912149|dbj|BAB88386.1|
autophagy 9 [Arabidopsis thaliana]
gi|20466356|gb|AAM20495.1| unknown protein [Arabidopsis
thaliana] gi|23198070|gb|AAN15562.1| unknown protein
[Arabidopsis thaliana] gi|23463043|gb|AAN33191.1|
At2g31260/F16D14.10 [Arabidopsis thaliana]
Length = 866
Score = 63.5 bits (153), Expect = 2e-09
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Frame = -2
Query: 511 RAVSQLGASTSAPIFRESLI-------QDLNHNELSPSARSPWWDRSGPQGGHAQ----- 368
R + + ASTS FRES++ +D ++ R+ WW R G H+Q
Sbjct: 721 RDLLNMEASTSGQFFRESILRHDQPEGEDSYGSQHPLDGRNQWWGR----GNHSQISTAH 776
Query: 367 ----TSFFEPPDFNQPAAFG--YHDKYSDRGSEDQDHEQR-FYWRDYNK--LSRTACTDD 215
SF EPPDF G + +S R E++D E+ W + + LSRT DD
Sbjct: 777 PATTNSFIEPPDFINRYTAGNLLDNSWSRRSIEEEDEEEEELDWEENARRNLSRTTFMDD 836
Query: 214 -DLEAGEFKLHFDDIY-SRPPDTPT 146
D+EAG LHFDD+Y SRP +T T
Sbjct: 837 NDIEAG-IDLHFDDVYSSRPQETST 860
>sp|P41750|PGLB_ASPFL POLYGALACTURONASE B PRECURSOR (PECTINASE) (PGL) (P1/P3)
gi|452468|gb|AAA85280.1| polygalacturonase
Length = 366
Score = 37.4 bits (85), Expect = 0.12
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -2
Query: 412 SPWWDRSGPQGGHAQTSFFEPPDFNQPAAFGYHDKYS 302
S WWD GP GG + F + P P G H K S
Sbjct: 115 SRWWDGKGPNGGKTKPKFIQYPQLESPTITGLHVKNS 151
>ref|NP_781300.1| lantibiotic permease protein spaE/mutE [Clostridium tetani E88]
gi|28202793|gb|AAO35237.1| lantibiotic permease protein
spaE/mutE [Clostridium tetani E88]
Length = 249
Score = 32.7 bits (73), Expect = 3.0
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 92 FLNKQSGT--KLSLKSLNIYSGSIWRSAINIIKMKFKFSCL*VIICACCSR*FVIISPVK 265
FL K G S+ +L + +W + I + SC+ + I S V + P++
Sbjct: 63 FLYKIDGAMKNKSVMALPVDLKKVWIAKILVAVKNIAISCMIIFITGQLS---VFVIPIR 119
Query: 266 ALFMILILRTSIRILIMITKCSWLIEIW 349
+ IL+L I IL++I W I +W
Sbjct: 120 SESNILMLSGFIGILVIIITSIWEIPLW 147
>ref|NP_643051.1| TonB-dependent receptor [Xanthomonas axonopodis pv. citri str. 306]
gi|21109025|gb|AAM37587.1| TonB-dependent receptor
[Xanthomonas axonopodis pv. citri str. 306]
Length = 996
Score = 32.7 bits (73), Expect = 3.0
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = -2
Query: 430 LSPSARSPWWDRSGPQGGHAQ----TSFFEPPDFNQPAAFGYHDKYSDRGSEDQDHEQRF 263
L PS R+P SGP G H+ T DF PA++G ++D GS F
Sbjct: 255 LPPSERNPQNVLSGPGGNHSTSYGGTFNLGTFDFRNPASYGNRYLFNDDGS--------F 306
Query: 262 YWRDYN--KLSRTACTDDD 212
YN +S T+C D D
Sbjct: 307 RRNRYNGTVVSNTSCVDCD 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,831,214
Number of Sequences: 1393205
Number of extensions: 9937253
Number of successful extensions: 26580
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26527
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
